Merge pull request #92 from cytham/v1.8.1-dev

v1.8.1
cytham · Sep 29, 2024 · e8d7175 · e8d7175
2 parents dcc4070 + 24c7ef4
commit e8d7175
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diff --git a/CHANGELOG.txt b/CHANGELOG.txt
@@ -4,6 +4,10 @@ NanoVar Changelog
 Release Summary:
 
 
+Version 1.8.1 - Sep 29, 2024
+    * Patch to restrict NumPy version to <2.0.0 for TF compatibility
+
+
 Version 1.8.0 - Sep 26, 2024
     * Migrated to pyproject.toml and removed setup.py
     * Increased default minimum SV read coverage from 2 to 4

diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-## Please note: Current v1.8.0 not compatible with Tensorflow >= 2.16.0, please downgrade to 2.15.1
+## Please note: Current v1.8.1 not compatible with Tensorflow >= 2.16.0, please downgrade to 2.15.1
 
 `pip install tensorflow-cpu==2.15.1`
 
@@ -209,6 +209,7 @@ pip install nanoinsight
 conda install -c bioconda mafft repeatmasker -y
 ```
 
+Note: If encountered "numpy.dtype size changed" tensorflow error while running NanoVar, ensure numpy version is <2.0.0 (i.e. pip install numpy 1.26.4).
 
 ## Documentation
 See [wiki](https://github.com/cytham/nanovar/wiki) for more information.

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,17 +1,12 @@
 [build-system]
-#requires = ["hatchling"]
-#build-backend = "hatchling.build"
 requires = ["setuptools"]
 build-backend = "setuptools.build_meta"
 
-#[tool.hatch.version]
-#path = "src/nanovar/version.py"
-
 [project]
 name = "nanovar"
 dynamic = ["version"]
 dependencies = [
-  "numpy>=1.17.3", 
+  "numpy>=1.17.3, <2.0.0",
   "scipy>=1.2.1",
   "biopython>=1.82",
   "pybedtools>=0.8.2",

diff --git a/src/nanovar/version.py b/src/nanovar/version.py
@@ -1 +1 @@
-__version__ = "1.8.0"
+__version__ = "1.8.1"