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tsitsvero committed Nov 24, 2023
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4 changes: 4 additions & 0 deletions .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 7ad7534908b80f443b54e85e7889f811
tags: 645f666f9bcd5a90fca523b33c5a78b7
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19 changes: 19 additions & 0 deletions _sources/calculators.rst.txt
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.. role:: hidden
:class: hidden-section

Title
===================================

.. automodule:: fande.ase
.. currentmodule:: fande.ase



Standard Calculators
-----------------------------

:hidden:`FandeCalc`
~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: FandeCalc
:members:
24 changes: 24 additions & 0 deletions _sources/data_modules.rst.txt
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.. role:: hidden
:class: hidden-section

Title
===================================

.. automodule:: fande.data
.. currentmodule:: fande.data


start out with
:code:`Data Module`.



Fande Data Module
-----------------------------

:hidden:`Model 1`
~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: FandeDataModuleASE
:members:

14 changes: 14 additions & 0 deletions _sources/index.rst.txt
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.. this is a comment, it is not rendered
when adding new *.rst files, reference them here
in this index.rst for them to be rendered and added to the
table of contents
fande project
==========

.. toctree::
:maxdepth: 2

models.rst
data_modules.rst
27 changes: 27 additions & 0 deletions _sources/models.rst.txt
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.. role:: hidden
:class: hidden-section

Title
===================================

.. automodule:: fande.models
.. currentmodule:: fande.models


start out with
:code:`fande.model....`.



Standard Models
-----------------------------

:hidden:`Model 1`
~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: ModelForces
:members:


.. autoclass:: ModelEnergies
:members:
123 changes: 123 additions & 0 deletions _static/_sphinx_javascript_frameworks_compat.js
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/* Compatability shim for jQuery and underscores.js.
*
* Copyright Sphinx contributors
* Released under the two clause BSD licence
*/

/**
* small helper function to urldecode strings
*
* See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
*/
jQuery.urldecode = function(x) {
if (!x) {
return x
}
return decodeURIComponent(x.replace(/\+/g, ' '));
};

/**
* small helper function to urlencode strings
*/
jQuery.urlencode = encodeURIComponent;

/**
* This function returns the parsed url parameters of the
* current request. Multiple values per key are supported,
* it will always return arrays of strings for the value parts.
*/
jQuery.getQueryParameters = function(s) {
if (typeof s === 'undefined')
s = document.location.search;
var parts = s.substr(s.indexOf('?') + 1).split('&');
var result = {};
for (var i = 0; i < parts.length; i++) {
var tmp = parts[i].split('=', 2);
var key = jQuery.urldecode(tmp[0]);
var value = jQuery.urldecode(tmp[1]);
if (key in result)
result[key].push(value);
else
result[key] = [value];
}
return result;
};

/**
* highlight a given string on a jquery object by wrapping it in
* span elements with the given class name.
*/
jQuery.fn.highlightText = function(text, className) {
function highlight(node, addItems) {
if (node.nodeType === 3) {
var val = node.nodeValue;
var pos = val.toLowerCase().indexOf(text);
if (pos >= 0 &&
!jQuery(node.parentNode).hasClass(className) &&
!jQuery(node.parentNode).hasClass("nohighlight")) {
var span;
var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
if (isInSVG) {
span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
} else {
span = document.createElement("span");
span.className = className;
}
span.appendChild(document.createTextNode(val.substr(pos, text.length)));
node.parentNode.insertBefore(span, node.parentNode.insertBefore(
document.createTextNode(val.substr(pos + text.length)),
node.nextSibling));
node.nodeValue = val.substr(0, pos);
if (isInSVG) {
var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
var bbox = node.parentElement.getBBox();
rect.x.baseVal.value = bbox.x;
rect.y.baseVal.value = bbox.y;
rect.width.baseVal.value = bbox.width;
rect.height.baseVal.value = bbox.height;
rect.setAttribute('class', className);
addItems.push({
"parent": node.parentNode,
"target": rect});
}
}
}
else if (!jQuery(node).is("button, select, textarea")) {
jQuery.each(node.childNodes, function() {
highlight(this, addItems);
});
}
}
var addItems = [];
var result = this.each(function() {
highlight(this, addItems);
});
for (var i = 0; i < addItems.length; ++i) {
jQuery(addItems[i].parent).before(addItems[i].target);
}
return result;
};

/*
* backward compatibility for jQuery.browser
* This will be supported until firefox bug is fixed.
*/
if (!jQuery.browser) {
jQuery.uaMatch = function(ua) {
ua = ua.toLowerCase();

var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
/(webkit)[ \/]([\w.]+)/.exec(ua) ||
/(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
/(msie) ([\w.]+)/.exec(ua) ||
ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
[];

return {
browser: match[ 1 ] || "",
version: match[ 2 ] || "0"
};
};
jQuery.browser = {};
jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
}
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