update dir + tests

cbg-ethz · Jul 22, 2024 · f7a35ea · f7a35ea
1 parent 527dbb8
commit f7a35ea
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/tests/test_long_deletions.py b/tests/test_long_deletions.py
@@ -16,8 +16,8 @@ def test_long_deletions():
 
     # Input data
     bamfile = "test_aln.cram"
-    snvsfile = "snv/SNV.tsv"
-    outfile = "snv/SNVs_0.010000.tsv"
+    snvsfile = "debug/snv/SNV.tsv"
+    outfile = "debug/snv/SNVs_0.010000.tsv"
 
     helper_long_deletions.main(bamfile=bamfile, snvsfile=snvsfile, outfile=outfile)
 

diff --git a/viloca/shotgun.py b/viloca/shotgun.py
@@ -688,6 +688,7 @@ def main(args):
     shutil.move("raw_reads", "debug")
     shutil.move("sampling", "debug")
     shutil.move("freq", "debug")
+    shutil.move("corrected", "debug")
     shutil.move("reads.fas", "debug")
     shutil.move("proposed.dat", "debug")
     shutil.copy("snv/SNVs_0.010000_final.vcf", "SNVs_0.010000_final.vcf")