Initial codemeta support

codemeta.json

@@ -0,0 +1,28 @@
+{
+  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
+  "@type": "SoftwareSourceCode",
+  "description": "AMES automates updating repository metadata.",
+  "name": "AMES: Automated Metadata Service",
+  "codeRepository": "https://github.com/caltechlibrary/ames",
+  "issueTracker": "https://github.com/caltechlibrary/ames/issues",
+  "license": "https://data.caltech.edu/license",
+  "version": "0.0.3",
+  "author": [
+    {
+      "@type": "Person",
+      "givenName": "Thomas E",
+      "familyName": "Morrell",
+      "affiliation": "Caltech Library",
+      "email": "[email protected]",
+      "@id": "https://orcid.org/0000-0001-9266-5146"
+    }],
+  "developmentStatus": "active",
+  "downloadUrl": "https://github.com/caltechlibrary/ames/archive/0.0.3.zip",
+  "keywords": [
+    "GitHub",
+    "metadata",
+    "software"
+  ],
+  "maintainer": "https://orcid.org/0000-0001-9266-5146",
+  "programmingLanguage": "Python"
+}

matchers/caltechdata.py

@@ -11,6 +11,7 @@ def match_cd_refs():
     keys =\
     subprocess.check_output(["dataset","-c","s3://dataset.library.caltech.edu/CaltechDATA","keys"],universal_newlines=True).splitlines()
     for k in keys:
+        print(k)
         metadata =\
         subprocess.check_output(["dataset","-c","s3://dataset.library.caltech.edu/CaltechDATA","read",k],universal_newlines=True)
         metadata = json.loads(metadata)['metadata']
@@ -49,12 +50,69 @@ def match_cd_refs():
                     print(response)
     return matches
 
+def codemeta_to_datacite(metadata):
+    datacite = {}
+    if 'author' in metadata:
+        creators = []
+        for a in metadata['author']:
+            cre = {}
+            cre['creatorName'] = a['familyName']+','+a['givenName']
+            cre['familyName'] = a['familyName']
+            cre['givenName'] = a['givenName']
+            if '@id' in a:
+                idv = a['@id']
+                split = idv.split('/')
+                idn = split[-1]
+                cre['nameIdentifiers']=[{\
+                        'nameIdentifier':idn,'nameIdentifierScheme':'ORCID','schemeURI':'http://orcid.org'}]
+                #Should check for type and remove hard code URI
+            if 'affiliation' in a:
+                cre['affiliations'] = [a['affiliation']]
+                #Should check if can support multiple affiliations
+            creators.append(cre)
+        datacite['creators'] = creators
+    if 'license' in metadata:
+        #Assuming uri to name conversion, not optimal
+        uri = metadata['license']
+        name = uri.split('/')[-1]
+        datacite['rightsList'] = [{'rights':name,'rightsURI':uri}]
+    return datacite
+
 def match_codemeta():
     keys =\
     subprocess.check_output(["dataset","-c","github_records","keys"],universal_newlines=True).splitlines()
     for k in keys:
         file_names =\
         [subprocess.check_output(["dataset","attachments",k],universal_newlines=True)]
         os.system("dataset "+" attached "+k)
+        codemeta=False
         for f in file_names:
-            print(f)
+            if f.split('.')[-1] == 'zip':
+                files =\
+                subprocess.check_output(['unzip','-l',f.rstrip()],universal_newlines=True).splitlines()
+                i = 4 #Ignore header
+                line = files[i]
+                while line[0] != '-':
+                    split = line.split('/')
+                    fname = split[-1]
+                    if fname == 'codemeta.json':
+                        path = ''
+                        sp = line.split('   ')[-1]
+                        os.system('unzip -j '+f.rstrip()+' '+sp+' -d .')
+                        codemeta = True
+                    i = i+1
+                    line = files[i]
+                    #Does not sensibly handle repos with multiple codemeta
+                    #files
+            os.system('rm '+f)
+
+        if codemeta == True:
+            token = os.environ['TINDTOK']
+
+            infile = open('codemeta.json','r')
+            meta = json.load(infile)
+            standardized = codemeta_to_datacite(meta)
+            response = caltechdata_edit(token,k,standardized,{},{},False)
+            print(response)
+
+

setup.py

@@ -1,7 +1,7 @@
 from setuptools import setup, find_packages
 setup(
         name = 'ames',
-        version ='0.0.2',
+        version ='0.0.3',
         packages = find_packages(),
         install_requires=[
             'requests'