As the active Brainstorm's user community is growing in size and diversity, we decided to launch this repository to data, processes and scripts shared by Brainstorm users, and make them available to all users.
If you are interested in running your own code from the Brainstorm interface and benefit from the powerful database and visualization systems, the best option is probably for you to create your own Brainstorm processes. It can take some time to get used to this logic but it is time well invested: you will be able to exchange code easily with your collaborators and the methods you develop could immediately reach thousands of users. Once your process are stable and address a recurrent need for other Brainstorm users, we can integrate them in the main Brainstorm distribution and maintain the code for you to ensure it stays compatible with the future releases of the software.
🧠 Check this page on How to write your own Brainstorm process
The easiest way to write your own process function is to start working from an existing example. As such, we provide three sample processes that can help you for specific tasks:
- Generate a head model / leadfield matrix:
process_headmodel_test.m - Generate an inverse model / source matrix:
process_beamformer_test.m - Load all the trials in input at once and process them:
process_example_customavg.m
To use processes from other users, copy only the process_*.m functions to the process folder in the user directory, typically:
| Windows | C:\Users\username\.brainstorm\process\ |
|---|---|
| Linux | /home/username/.brainstorm/process/ |
| MacOS | /Users/username/.brainstorm/process/ |
The main way to can send your script and process in Submit a process or script through a GitHub Pull-Request, see the CONTRIBUTING.md document for further details. Besides the process_*.m file, provide a README.md file describing what the process do, and a screenshot.png image file showing the GUI of the process.
💡 If you want to contribute, but you're not familiar with GitHub, share with us your contribution in the Brainstorm Forum.
-
How to write your own process
https://neuroimage.usc.edu/brainstorm/Tutorials/TutUserProcess -
Scripting (in Brainstorm)
https://neuroimage.usc.edu/brainstorm/Tutorials/Scripting -
Brainstorm's Database Structure
https://neuroimage.usc.edu/brainstorm/Tutorials/Database -
Brainstorm Forum
https://neuroimage.usc.edu/forums/ -
Brainstorm source code
https://github.com/brainstorm-tools/brainstorm3