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  1. stitchimpute stitchimpute Public

    Pipeline that uses STITCH for imputing genotypes from low-coverage NGS data in a population.

    Jupyter Notebook 5

  2. flexlmm flexlmm Public

    Flexible linear mixed model framework for Genome Wide Association Studies

    Nextflow 5

  3. FEHAT FEHAT Public

    Software to detect heart rate from medaka embryos

    Python 4 1

  4. MIKK_genome_companion_paper MIKK_genome_companion_paper Public

    Repository containing the code used for the MIKK panel genome analysis

    R 1

  5. MIKK_genome_main_paper MIKK_genome_main_paper Public

    Forked from IanBrettell/mikk_genome

    Code for the paper describing the MIKK panel and its genome

    HTML

  6. foveafit foveafit Public

    R package for OCT analysis

    R

Repositories

Showing 10 of 13 repositories
  • medaka_behaviour_pilot Public

    Repository describing the analysis of bold-shy behaviours in different medaka fish strains.

    birneylab/medaka_behaviour_pilot’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 21, 2024
  • flexlmm Public

    Flexible linear mixed model framework for Genome Wide Association Studies

    birneylab/flexlmm’s past year of commit activity
    Nextflow 5 MIT 0 0 0 Updated Oct 3, 2024
  • ukb_smoke_copd_lung_cancer_gxe Public
    birneylab/ukb_smoke_copd_lung_cancer_gxe’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 25, 2024
  • FEHAT Public

    Software to detect heart rate from medaka embryos

    birneylab/FEHAT’s past year of commit activity
    Python 4 GPL-3.0 1 0 0 Updated Sep 19, 2024
  • stitchimpute Public

    Pipeline that uses STITCH for imputing genotypes from low-coverage NGS data in a population.

    birneylab/stitchimpute’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Aug 22, 2024
  • varexplore Public

    Explore genetic variants linked around a variant of interest for low-coverage sequencing data

    birneylab/varexplore’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 28, 2024
  • CNest Public Forked from tf2/CNest

    Copy Number Methods for Detection and Genome Wide Association Tests

    birneylab/CNest’s past year of commit activity
    C++ 0 5 0 0 Updated Nov 3, 2023
  • somites Public Forked from IanBrettell/somites
    birneylab/somites’s past year of commit activity
    HTML 0 1 0 0 Updated Aug 16, 2023
  • MIKK_genome_main_paper Public Forked from IanBrettell/mikk_genome

    Code for the paper describing the MIKK panel and its genome

    birneylab/MIKK_genome_main_paper’s past year of commit activity
    HTML 0 MIT 3 0 0 Updated Feb 9, 2022
  • MIKK_genome_companion_paper Public

    Repository containing the code used for the MIKK panel genome analysis

    birneylab/MIKK_genome_companion_paper’s past year of commit activity
    R 1 MIT 0 0 0 Updated Dec 14, 2021
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