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Overhaul with Pydantic and format version generic 0.3 / model 0.5 #1028

Overhaul with Pydantic and format version generic 0.3 / model 0.5

Overhaul with Pydantic and format version generic 0.3 / model 0.5 #1028

Workflow file for this run

name: Test and Deploy bioimageio.spec
on:
push:
branches: [ main ]
pull_request:
branches: [ "**" ]
jobs:
black:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Check files using the black formatter
uses: rickstaa/action-black@v1
id: action_black
with:
black_args: "."
- name: Annotate diff changes using reviewdog
if: steps.action_black.outputs.is_formatted == 'true'
uses: reviewdog/action-suggester@v1
with:
tool_name: blackfmt
test:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
- name: Install dependencies
run: |
pip install --upgrade pip
pip install -e .[dev]
- uses: jakebailey/pyright-action@v1
- name: Check autogenerated imports
run: python scripts/generate_version_submodule_imports.py check
- name: Get Date
id: get-date
run: |
echo "week=$(/bin/date -u "+%Y-%U")" >> $GITHUB_OUTPUT
shell: bash
- uses: actions/cache@v3
with:
path: tests/cache
key: ${{ runner.os }}-${{ steps.get-date.outputs.week }}-${{ hashFiles('**/lockfiles') }}
- name: Run tests
run: python -m unittest
conda-build:
runs-on: ubuntu-latest
needs: test
steps:
- name: checkout
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Install Conda environment with Micromamba
uses: mamba-org/provision-with-micromamba@main
with:
environment-file: false
environment-name: build-env
channels: conda-forge
extra-specs: |
boa
- name: linux conda build
shell: bash -l {0}
run: |
conda mambabuild -c conda-forge conda-recipe
deploy:
runs-on: ubuntu-latest
needs: test
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install dependencies
run: |
pip install .
- name: Generate spec docs
run: python scripts/generate_spec_documentation.py
- name: Generate JSON schemas
run: python scripts/generate_json_schemas.py
- name: Get branch name to deploy to
id: get_branch
shell: bash
run: |
if [[ -n '${{ github.event.pull_request.head.ref }}' ]]; then branch=gh-pages-${{ github.event.pull_request.head.ref }}; else branch=gh-pages; fi
echo "::set-output name=branch::$branch"
- name: Deploy to ${{ steps.get_branch.outputs.branch }} 🚀
uses: JamesIves/github-pages-deploy-action@v4
with:
branch: ${{ steps.get_branch.outputs.branch }}
folder: dist