current state: prerelease, This will be curated into a more interpretable and user friendly version soon.
See https://github.com/aramanlab/Doran_etal_2023 for the curated version
This code base is using the Julia Language and DrWatson to make a reproducible scientific project for the paper
Personalized signatures of human gut bacteria discovered from proteome coevolution Doran et al. , ((paper year))
To (locally) reproduce this project, do the following:
- Download this code base. Notice that raw data are typically not included in the
git-history and may need to be downloaded independently.
git clone [email protected]:aramanlab/Doran_etal_2022.git cd Doran_etal_2022 git submodule init git submodule update - Open a Julia console and do:
julia> using Pkg julia> Pkg.add("DrWatson") # install globally, for using `quickactivate` julia> Pkg.activate("path/to/this/project") julia> Pkg.instantiate()
This will install all necessary packages for you to be able to run the scripts and everything should work out of the box, including correctly finding local paths.