Release 0.6.0

README.md

@@ -7,7 +7,7 @@
 ![os](https://img.shields.io/badge/OS-win%7Cmac%7Clinux-9cf)
 ![python](https://img.shields.io/badge/Python-3.10+-darkgreen)
 
-> **Note:** EOS is currently in the alpha development stage. Much additional functionality and enhancements are planned.
+> **Note:** EOS is actively being developed. Much additional functionality and enhancements are planned.
 > It currently has a core feature set to use for research. Please report any issues, make feature requests, or contribute to development!
 
 The Experiment Orchestration System (EOS) is a comprehensive software framework and runtime for laboratory automation, designed

docker/.env.example

@@ -1,4 +1,3 @@
-# EOS #####################################
 COMPOSE_PROJECT_NAME=eos
 
 # MongoDB admin credentials
@@ -8,17 +7,3 @@ EOS_MONGODB_ROOT_PASSWORD=
 # MinIO admin credentials
 EOS_MINIO_ROOT_USER=
 EOS_MINIO_ROOT_PASSWORD=
-
-# Budibase ################################
-# You can set the below to random values
-BB_JWT_SECRET=
-BB_MINIO_ACCESS_KEY=
-BB_MINIO_SECRET_KEY=
-BB_REDIS_PASSWORD=
-BB_COUCHDB_USER=
-BB_COUCHDB_PASSWORD=
-BB_INTERNAL_API_KEY=
-
-# Admin user credentials to login to Budibase
-BB_ADMIN_USER_EMAIL=
-BB_ADMIN_USER_PASSWORD=

docker/docker-compose.yml

@@ -38,30 +38,6 @@ services:
       - minio_data:/data
     command: server --console-address ":9001" /data
 
-  eos-budibase:
-    image: budibase/budibase:2.32.12-sqs
-    container_name: eos-budibase
-    hostname: eos-budibase
-    restart: unless-stopped
-    environment:
-      JWT_SECRET: ${BB_JWT_SECRET}
-      MINIO_ACCESS_KEY: ${BB_MINIO_ACCESS_KEY}
-      MINIO_SECRET_KEY: ${BB_MINIO_SECRET_KEY}
-      REDIS_PASSWORD: ${BB_REDIS_PASSWORD}
-      COUCHDB_USER: ${BB_COUCHDB_USER}
-      COUCHDB_PASSWORD: ${BB_COUCHDB_PASSWORD}
-      INTERNAL_API_KEY: ${BB_INTERNAL_API_KEY}
-      BB_ADMIN_USER_EMAIL: ${BB_ADMIN_USER_EMAIL}
-      BB_ADMIN_USER_PASSWORD: ${BB_ADMIN_USER_PASSWORD}
-    ports:
-      - "8080:80"
-    networks:
-      - eos_network
-    extra_hosts:
-      - "host.docker.internal:host-gateway"
-    volumes:
-      - budibase_data:/data
-
 networks:
   eos_network:
     name: eos_network
@@ -72,5 +48,3 @@ volumes:
     driver: local
   minio_data:
     driver: local
-  budibase_data:
-    driver: local

docs/conf.py

@@ -6,10 +6,11 @@
 # -- Project information -----------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
 
+
 project = "eos"
 copyright = "2024, UNC Robotics"
 author = "Angelos Angelopoulos"
-release = "0.4.0"
+release = "0.6.0"
 
 extensions = [
     "sphinx.ext.autodoc",

docs/index.rst

@@ -3,7 +3,7 @@ The Experiment Orchestration System (EOS)
 
 .. note::
 
-    EOS is currently in the alpha development stage.
+    EOS is actively being developed.
     Much additional functionality and enhancements are planned. It currently has a core feature set to use for research.
     Please report any issues, make feature requests, or contribute to development!
 

docs/user-guide/campaigns.rst

@@ -41,27 +41,27 @@ Looking at the task specification of the ``score_color`` task, we also see that
 .. code-block:: yaml
 
     type: Score Color
-    description: Score a color based on how close it is to an expected color
+    desc: Score a color based on how close it is to an expected color
 
     input_parameters:
       red:
-        type: integer
+        type: int
         unit: n/a
-        description: The red component of the color
+        desc: The red component of the color
       green:
-        type: integer
+        type: int
         unit: n/a
-        description: The green component of the color
+        desc: The green component of the color
       blue:
-        type: integer
+        type: int
         unit: n/a
-        description: The blue component of the color
+        desc: The blue component of the color
 
     output_parameters:
       loss:
-        type: decimal
+        type: float
         unit: n/a
-        description: Total loss of the color compared to the expected color
+        desc: Total loss of the color compared to the expected color
 
 Taking all these together, we see that this experiment involves selecting CMYK color component volumes, as well as a
 mixing time and mixing speed and trying to minimize the loss of a synthesized color compared to an expected color.
@@ -72,8 +72,6 @@ This setup is also summarized in the ``optimizer.py`` file adjacent to ``experim
 
 .. code-block:: python
 
-    from typing import Type, Tuple, Dict
-
     from bofire.data_models.acquisition_functions.acquisition_function import qNEI
     from bofire.data_models.enum import SamplingMethodEnum
     from bofire.data_models.features.continuous import ContinuousOutput, ContinuousInput
@@ -83,7 +81,7 @@ This setup is also summarized in the ``optimizer.py`` file adjacent to ``experim
     from eos.optimization.abstract_sequential_optimizer import AbstractSequentialOptimizer
 
 
-    def eos_create_campaign_optimizer() -> Tuple[Dict, Type[AbstractSequentialOptimizer]]:
+    def eos_create_campaign_optimizer() -> tuple[dict, type[AbstractSequentialOptimizer]]:
         constructor_args = {
             "inputs": [
                 ContinuousInput(key="dispense_colors.cyan_volume", bounds=(0, 5)),