JAX NGS Operations Nextflow DSL2 Pipelines

This repository contains production bioinformatic analysis pipelines.

Pipeline Level Documentation, Quick Start, and Developer Documentation:

Please see the Wiki documentation associated with this repository for all documentation.

Name		Name	Last commit message	Last commit date
Latest commit History 1,465 Commits
.github/workflows		.github/workflows
bin		bin
config		config
lib		lib
modules		modules
run_scripts		run_scripts
subworkflows		subworkflows
test		test
tests		tests
workflows		workflows
.gitignore		.gitignore
.zenodo.json		.zenodo.json
LICENSE		LICENSE
README.md		README.md
ReleaseNotes.md		ReleaseNotes.md
bitbucket-pipelines.yml		bitbucket-pipelines.yml
launch_tests.sh		launch_tests.sh
main.nf		main.nf
nextflow.config		nextflow.config
nf-test.config		nf-test.config
run.sh		run.sh