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Update README.md
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Serka-M authored Feb 15, 2023
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Expand Up @@ -13,7 +13,7 @@ The mmlong2 workflow is a continuation of [mmlong](https://github.com/SorenKarst
<img src="msc/mmlong2-np-wf.png" alt="mmlong2-np" style="zoom:100%;" />

**Installation (Conda):**<br/>
A local [Conda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/linux.html) environment containing all the required software dependencies can be created by using the code chunk posted below. To acquire microbial genome taxonomy and annotation results, databases will have to be setup.
A local [Conda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/linux.html) environment containing all the required software dependencies can be created by using the code chunk posted below. To acquire microbial genome taxonomy and annotation results, databases will have to be [setup](msc/mmlong2-db.md).
```
conda create --prefix mmlong2 -c conda-forge -c bioconda snakemake=7.19.1 singularity=3.8.6 zenodo_get=1.3.4 pv=1.6.6 pigz=2.6 tar=1.34 -y
conda activate ./mmlong2 || source activate ./mmlong2 && zenodo_get -r 7635029 -o mmlong2/bin
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