AutoTST Updates #12
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| schedule: | |
| - cron: '0 0 * * *' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Checkout RMG-Py | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ReactionMechanismGenerator/RMG-Py | |
| path: RMG-Py | |
| ref: main | |
| fetch-depth: 1 | |
| - name: Checkout RMG-database | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ReactionMechanismGenerator/RMG-database | |
| path: RMG-database | |
| ref: main | |
| fetch-depth: 1 | |
| - name: Set up AutoTST | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| environment-file: environment.yml | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: tst_env | |
| use-mamba: true | |
| - name: Update Environment | |
| run: | | |
| mamba env update -f environment.yml | |
| - name: Add AUTOTST to ENV | |
| run: | | |
| export AUTOTST=$(pwd) | |
| export PYTHONPATH=$PYTHONPATH:$AUTOTST | |
| echo 'export PYTHONPATH=$PYTHONPATH:'"$(pwd)" >> $GITHUB_ENV | |
| echo 'export PATH=$PATH:'"$(pwd)" >> $GITHUB_ENV | |
| echo 'export PYTHONPATH=$PYTHONPATH:'"$(pwd)" >> ~/.bashrc | |
| echo 'export PATH=$PATH:'"$(pwd)" >> ~/.bashrc | |
| - name: Install RMG-Py | |
| run: | | |
| cd RMG-Py | |
| mamba env create -f environment.yml | |
| cd .. | |
| - name: Cythonize RMG-Py | |
| run: | | |
| cd RMG-Py | |
| conda activate rmg_env | |
| make | |
| echo "PYTHONPATH=$(pwd):$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PATH=$(pwd):$PATH" >> $GITHUB_ENV | |
| echo "export rmgpy_path=$(pwd)" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$(pwd):$PYTHONPATH" >> ~/.bashrc | |
| echo "PATH=$(pwd):$PATH" >> ~/.bashrc | |
| echo "export rmgpy_path=$(pwd)" >> ~/.bashrc | |
| - name: Unittest | |
| run: | | |
| source ~/.bashrc | |
| conda activate tst_env | |
| make unittests | |