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34 Open 145 Closed
34 Open 145 Closed
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Issues list

Residual hook causes NAs
#191 opened Oct 14, 2024 by JThomasWatson
2
DEG counts are associated with the number of cells
#188 opened May 8, 2024 by ZunpengLiu
Error: grouping factors must have > 1 sampled level
#187 opened Mar 4, 2024 by andrewsong777
1
Error in getClassDef(x@superClass, package = packageSlot(x))@virtual : no applicable method for @ applied to an object of class "NULL"
#184 opened Jan 17, 2024 by nfancy
10
Error in validObject(.Object): invalid class “corMatrix” object: 'sd' slot has nonfinite elements
#180 opened Sep 18, 2023 by derrik-gratz
7
lrTest's with CoefficientHypothesis and contrast matrix give inconsistent results
#178 opened Mar 21, 2023 by ImNotaGit
p values not reported for all features
#177 opened Jan 25, 2023 by susheelbhanu
Low logFCs and failure to converge?
#173 opened Mar 29, 2022 by learning-MD
Support for passing hypothesis to doLRT in summary() as in lrTest()
#171 opened Dec 23, 2021 by ImNotaGit
6
What should I do with the "NaN" values, with extremely small Pr(>Chisq) in the coef column of the summary(zlmCond) result?
#168 opened Nov 30, 2021 by danli349
Applicability of MAST to spatial transcriptomics analyses without single-cell resolution
#166 opened Aug 9, 2021 by jeremycfd
Deviance
#155 opened Apr 15, 2021 by sofiapuvogelvittini
2
gseaAfterBoot enriched genes
#154 opened Apr 13, 2021 by EBosi
5
Convergence issues due to all cells in comparison expressed certain genes?
#151 opened Mar 4, 2021 by hoholee
2
Problems when fitting a linear-mixed model ('glmer') with sc-RNAseq data
#148 opened Dec 4, 2020 by aidarripoll
4
Error: grouping factors must have > 1 sampled level
#146 opened Nov 28, 2020 by esrasefik
4
Discrepancy between including factors as covariates directly vs hard-coding dummy variables
#144 opened Nov 12, 2020 by jmchan88
5
Unexpected Large Confidence Interval of LogFC
#142 opened Oct 13, 2020 by JiaxinLi-lipluszn
2
DE between different groups : post-hoc tests?
#139 opened Jul 10, 2020 by fabien-tell
3
bootVcov1 gives an error due to differences in the dimension of the bootstraps
#131 opened Apr 22, 2020 by jaquol
6
Speed up fitting process when including random effect with lme4?
#130 opened Apr 8, 2020 by hoholee
5
Working weights are not updated properly in bayesglm.R
#110 opened Apr 16, 2019 by NikTuzov
25
no H cmponenet after running the "zlm" function
#109 opened Mar 19, 2019 by kristinazuza
3
MAST unable to estimate components when including mixed effect
#98 opened Aug 1, 2018 by gabprg
9
Nested batch effects in MAST
#97 opened Aug 1, 2018 by LuckyMD
14
ProTip! Exclude everything labeled bug with -label:bug.