Merge pull request #868 from Project-MONAI/release/0.1.27

Release/0.1.27
Project-MONAI · Aug 24, 2023 · 8808c16 · 8808c16
2 parents 2a8bef5 + fb02642
commit 8808c16
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diff --git a/doc/dependency_decisions.yml b/doc/dependency_decisions.yml
@@ -8,6 +8,7 @@
     - 3.7.100.14
     - 3.7.100.25
     - 3.7.105.20
+    - 3.7.200.13
     :when: 2022-10-14 23:36:39.233755632 Z
 - - :approve
   - AWSSDK.SecurityToken
@@ -18,14 +19,16 @@
     - 3.7.100.14
     - 3.7.100.25
     - 3.7.101.26
+    - 3.7.201.9
     :when: 2022-10-14 23:36:39.628260680 Z
 - - :approve
   - Ardalis.GuardClauses
   - :who: mocsharp
     :why: MIT (https://github.com/ardalis/GuardClauses.Analyzers/raw/master/LICENSE)
     :versions:
     - 4.0.1
-    :when: 2022-10-14 23:36:39.999308652 Z
+    - 4.1.1
+    :when: 2023-08-15 16:36:39.999308652 Z
 - - :approve
   - AutoFixture
   - :who: mocsharp
@@ -399,6 +402,8 @@
     :versions:
     - 6.0.1
     - 7.0.0
+    - 2.2.0
+    - 3.1.0
     :when: 2022-10-14 23:37:00.596541774 Z
 - - :approve
   - Microsoft.Extensions.Configuration.Abstractions
@@ -414,6 +419,7 @@
     :why: MIT (https://github.com/dotnet/runtime/raw/main/LICENSE.TXT)
     :versions:
     - 3.0.0
+    - 3.1.0
     - 2.2.0
     - 7.0.3
     :when: 2022-10-14 23:37:01.366955631 Z
@@ -469,6 +475,7 @@
   - :who: mocsharp
     :why: MIT (https://github.com/dotnet/runtime/raw/main/LICENSE.TXT)
     :versions:
+    - 3.1.0
     - 6.0.0
     - 6.0.1
     - 2.2.0
@@ -506,6 +513,7 @@
     - 6.0.12
     - 6.0.14
     - 6.0.15
+    - 6.0.21
     :when: 2022-10-14 23:37:05.589288760 Z
 - - :approve
   - Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions
@@ -515,6 +523,7 @@
     - 6.0.12
     - 6.0.14
     - 6.0.15
+    - 6.0.21
     :when: 2022-10-14 23:37:05.963687838 Z
 - - :approve
   - Microsoft.Extensions.FileProviders.Abstractions
@@ -585,6 +594,8 @@
     :versions:
     - 6.0.0
     - 7.0.0
+    - 2.2.0
+    - 3.1.0
     :when: 2022-10-14 23:37:09.454044811 Z
 - - :approve
   - Microsoft.Extensions.Logging.Abstractions
@@ -593,7 +604,9 @@
     :versions:
     - 6.0.2
     - 2.0.0
+    - 6.0.4
     - 7.0.0
+    - 6.0.4
     :when: 2022-10-14 23:37:09.821156462 Z
 - - :approve
   - Microsoft.Extensions.Logging.Configuration
@@ -851,6 +864,7 @@
     :versions:
     - 4.0.6
     - 4.0.7
+    - 5.0.0
     :when: 2022-10-14 23:37:22.726827733 Z
 - - :approve
   - Moq
@@ -923,13 +937,15 @@
     :why: BSD-3-Clause (https://github.com/App-vNext/Polly/raw/main/LICENSE.txt)
     :versions:
     - 7.2.3
+    - 7.2.4
     :when: 2022-10-14 23:37:30.185774702 Z
 - - :approve
   - RabbitMQ.Client
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/rabbitmq/rabbitmq-dotnet-client/raw/main/LICENSE-APACHE2)
     :versions:
     - 6.4.0
+    - 6.5.0
     :when: 2022-10-14 23:37:30.555988654 Z
 - - :approve
   - Serilog
@@ -1195,7 +1211,15 @@
     :why: MIT (https://github.com/dotnet/runtime/raw/main/LICENSE.TXT)
     :versions:
     - 5.0.0
+    - 4.3.0
     :when: 2022-10-14 23:37:45.155805918 Z
+- - :approve
+  - System.ComponentModel
+  - :who: nsouth
+    :why: MICROSOFT .NET LIBRARY License (http://go.microsoft.com/fwlink/?LinkId=329770)
+    :versions:
+    - 4.3.0
+    :when: 2023-8-18 08:53:45.155805918 Z
 - - :approve
   - System.Configuration.ConfigurationManager
   - :who: mocsharp
@@ -1381,6 +1405,13 @@
     :versions:
     - 4.3.0
     :when: 2022-10-14 23:37:55.295846123 Z
+- - :approve
+  - System.IO.Hashing
+  - :who: nsouth
+    :why: MIT
+    :versions:
+    - 7.0.0
+    :when: 2023-8-18 08:53:55.295846123 Z
 - - :approve
   - System.IdentityModel.Tokens.Jwt
   - :who: mocsharp
@@ -1425,6 +1456,7 @@
     :why: MIT (https://github.com/dotnet/corefx/raw/master/LICENSE.TXT)
     :versions:
     - 4.5.4
+    - 4.5.5
     :when: 2022-10-14 23:37:58.271685148 Z
 - - :approve
   - System.Net.Http
@@ -1902,6 +1934,7 @@
     :versions:
     - 4.7.1
     - 6.0.0
+    - 7.0.0
     :when: 2022-10-14 23:38:26.916570960 Z
 - - :approve
   - System.Threading.Tasks
@@ -2336,6 +2369,7 @@
     :versions:
     - 0.1.21
     - 0.1.23
+    - 0.1.25
     :when: 2022-12-15 21:43:10.781625468 Z
 - - :approve
   - Monai.Deploy.Messaging.RabbitMQ
@@ -2344,6 +2378,7 @@
     :versions:
     - 0.1.21
     - 0.1.23
+    - 0.1.25
     :when: 2022-12-15 21:43:20.975488411 Z
 - - :approve
   - Monai.Deploy.Storage
@@ -2353,6 +2388,7 @@
     - 0.2.10
     - 0.2.13
     - 0.2.15
+    - 0.2.18
     :when: 2022-11-02 21:43:46.964761113 Z
 - - :approve
   - Monai.Deploy.Storage.MinIO
@@ -2362,6 +2398,7 @@
     - 0.2.10
     - 0.2.13
     - 0.2.15
+    - 0.2.18
     :when: 2022-11-02 21:43:57.620687413 Z
 - - :approve
   - Monai.Deploy.Storage.S3Policy
@@ -2371,6 +2408,7 @@
     - 0.2.10
     - 0.2.13
     - 0.2.15
+    - 0.2.18
     :when: 2022-11-02 21:44:06.994266372 Z
 - - :approve
   - MongoDB.Bson
@@ -2553,6 +2591,7 @@
     :why: MIT (https://raw.githubusercontent.com/CommunityToolkit/WindowsCommunityToolkit/main/License.md)
     :versions:
     - 7.1.2
+    - 8.1.0
     :when: 2023-05-17 14:44:00.000000000 Z
 - - :approve
   - fo-dicom
@@ -2561,5 +2600,11 @@
     :versions:
     - 5.0.3
     :when: 2023-05-17 14:44:00.000000000 Z
-
+- - :approve
+  - CommunityToolkit.HighPerformance
+  - :who: nsouth
+    :why: MIT
+    :versions:
+    - 8.1.0
+    :when: 2023-08-18 09:09:00.000000000 Z
 
diff --git a/guidelines/mwm-workflow-spec.md b/guidelines/mwm-workflow-spec.md
@@ -249,6 +249,7 @@ These tasks are borken down into different types:
 | ---- | ------- |
 | Router | A task to control the flow through a workflow |
 | Export | A task to trigger the exporting of data |
+| External App | A task to trigger execution of an external app |
 | `Plugin_Name` | A task which has a matching Plugin installed & enabled |
 
 
@@ -402,6 +403,11 @@ Example (output sent to another task if the patient is female, otherwise to PACS
 
 Export destinations define an external location to which the output of the task can be sent. This will take the form of an event published to a pub/sub service notifying of an available export to a specific destination reference. Most commonly, the export location will be a PACs system and the notification will be picked up by the Monai Informatics Gateway.
 
+#### External App
+These are task types that allow for execution of external apps and in 
+structure are identical to the Export type above.
+
+
 #### Plugin
 These are tasks are Named the same as the installed Pluging.
 The task also requires these extra attributes:-

diff --git a/...onfiguration/ArgoCallbackConfiguration.cs → ...onfiguration/ArgoCallbackConfiguration.cs b/...onfiguration/ArgoCallbackConfiguration.cs → ...onfiguration/ArgoCallbackConfiguration.cs
@@ -16,7 +16,7 @@
 
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class ArgoCallbackConfiguration
     {

diff --git a/...onfiguration/BackgroundServiceSettings.cs → ...onfiguration/BackgroundServiceSettings.cs b/...onfiguration/BackgroundServiceSettings.cs → ...onfiguration/BackgroundServiceSettings.cs
@@ -16,7 +16,7 @@
 
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class BackgroundServiceSettings
     {

diff --git a/...d/Configuration/ConfigurationValidator.cs → ...n/Configuration/ConfigurationValidator.cs b/...d/Configuration/ConfigurationValidator.cs → ...n/Configuration/ConfigurationValidator.cs
@@ -19,7 +19,7 @@
 using Microsoft.Extensions.Logging;
 using Microsoft.Extensions.Options;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     /// <summary>
     /// Validates configuration based on application requirements and DICOM VR requirements.

diff --git a/.../Configuration/DicomAgentConfiguration.cs → .../Configuration/DicomAgentConfiguration.cs b/.../Configuration/DicomAgentConfiguration.cs → .../Configuration/DicomAgentConfiguration.cs
@@ -16,7 +16,7 @@
 
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class DicomAgentConfiguration
     {

diff --git a/...tion/Exceptions/ConfigurationException.cs → ...tion/Exceptions/ConfigurationException.cs b/...tion/Exceptions/ConfigurationException.cs → ...tion/Exceptions/ConfigurationException.cs
@@ -17,7 +17,7 @@
 using System;
 using System.Runtime.Serialization;
 
-namespace Monai.Deploy.WorkflowManager.Configuration.Exceptions
+namespace Monai.Deploy.WorkflowManager.Common.Configuration.Exceptions
 {
     /// <summary>
     /// Represnets an exception based upon invalid configuration.

diff --git a/...ration/InformaticsGatewayConfiguration.cs → ...ration/InformaticsGatewayConfiguration.cs b/...ration/InformaticsGatewayConfiguration.cs → ...ration/InformaticsGatewayConfiguration.cs
@@ -16,7 +16,7 @@
 
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class InformaticsGatewayConfiguration
     {

diff --git a/...nfiguration/MessageBrokerConfiguration.cs → ...nfiguration/MessageBrokerConfiguration.cs b/...nfiguration/MessageBrokerConfiguration.cs → ...nfiguration/MessageBrokerConfiguration.cs
@@ -17,7 +17,7 @@
 using Microsoft.Extensions.Configuration;
 using Monai.Deploy.Messaging.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class MessageBrokerConfiguration : MessageBrokerServiceConfiguration
     {

diff --git a/...uration/MessageBrokerConfigurationKeys.cs → ...uration/MessageBrokerConfigurationKeys.cs b/...uration/MessageBrokerConfigurationKeys.cs → ...uration/MessageBrokerConfigurationKeys.cs
@@ -16,7 +16,7 @@
 
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class MessageBrokerConfigurationKeys
     {

diff --git a/...ploy.WorkflowManager.Configuration.csproj → ...rkflowManager.Common.Configuration.csproj b/...ploy.WorkflowManager.Configuration.csproj → ...rkflowManager.Common.Configuration.csproj
@@ -31,8 +31,8 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Monai.Deploy.Messaging" Version="0.1.23" />
-    <PackageReference Include="Monai.Deploy.Storage" Version="0.2.15" />
+    <PackageReference Include="Monai.Deploy.Messaging" Version="0.1.25" />
+    <PackageReference Include="Monai.Deploy.Storage" Version="0.2.18" />
   </ItemGroup>
 
   <ItemGroup>

diff --git a/src/Shared/Configuration/PagedOptions.cs → src/Common/Configuration/PagedOptions.cs b/src/Shared/Configuration/PagedOptions.cs → src/Common/Configuration/PagedOptions.cs
@@ -15,7 +15,7 @@
  */
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class PagedOptions
     {

diff --git a/...hared/Configuration/PaginationSettings.cs → ...ommon/Configuration/PaginationSettings.cs b/...hared/Configuration/PaginationSettings.cs → ...ommon/Configuration/PaginationSettings.cs
@@ -16,7 +16,7 @@
 
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class EndpointSettings
     {

diff --git a/...hared/Configuration/RetryConfiguration.cs → ...ommon/Configuration/RetryConfiguration.cs b/...hared/Configuration/RetryConfiguration.cs → ...ommon/Configuration/RetryConfiguration.cs
@@ -18,7 +18,7 @@
 using System.Collections.Generic;
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class RetryConfiguration
     {

diff --git a/...red/Configuration/StorageConfiguration.cs → ...mon/Configuration/StorageConfiguration.cs b/...red/Configuration/StorageConfiguration.cs → ...mon/Configuration/StorageConfiguration.cs
@@ -18,7 +18,7 @@
 using Microsoft.Extensions.Configuration;
 using Monai.Deploy.Storage.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class StorageConfiguration : StorageServiceConfiguration
     {

diff --git a/...Configuration/TaskManagerConfiguration.cs → ...Configuration/TaskManagerConfiguration.cs b/...Configuration/TaskManagerConfiguration.cs → ...Configuration/TaskManagerConfiguration.cs
@@ -17,7 +17,7 @@
 using System.Collections.Generic;
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class TaskManagerConfiguration
     {

diff --git a/...d/Configuration/WorkflowManagerOptions.cs → ...n/Configuration/WorkflowManagerOptions.cs b/...d/Configuration/WorkflowManagerOptions.cs → ...n/Configuration/WorkflowManagerOptions.cs
@@ -18,7 +18,7 @@
 using System.Collections.Generic;
 using Microsoft.Extensions.Configuration;
 
-namespace Monai.Deploy.WorkflowManager.Configuration
+namespace Monai.Deploy.WorkflowManager.Common.Configuration
 {
     public class WorkflowManagerOptions : PagedOptions
     {
@@ -71,6 +71,9 @@ public class WorkflowManagerOptions : PagedOptions
         [ConfigurationKeyName("dicomTagsDisallowed")]
         public string DicomTagsDisallowed { get; set; } = string.Empty;
 
+        [ConfigurationKeyName("migExternalAppPlugins")]
+        public List<string> MigExternalAppPlugins { get; set; }
+
         public WorkflowManagerOptions()
         {
             Messaging = new MessageBrokerConfiguration();