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26 Open 17 Closed
26 Open 17 Closed
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Issues list

IndexError: index 0 is out of bounds for axis 0 with sieze o
#53 opened May 18, 2024 by zhouliqing0516
How to increase the deault size of 3 Armstrong in POVME3
#52 opened Feb 26, 2024 by obasekigit
POVME doesn't work with smal GridSpacings and large radii: numpy.core._exceptions._ArrayMemoryError
#51 opened Jul 27, 2023 by thalesdovm
no results got after run "python ../analyzeClusterMembershipInGroups.py"
#50 opened Nov 13, 2022 by yangkimm
How to choose the center of inclusion sphere?
#49 opened Oct 19, 2022 by TianmingQu
2
Many common questions have been answered in "closed" issues!
#48 opened Oct 2, 2022 by j-wags
Error on using POVME3
#43 opened Dec 14, 2021 by TianmingQu
3
Update POVME3 to Python3 enhancement help wanted
#33 opened Dec 13, 2019 by Seanny123
6
generic temporary work folder causing overwriting issues enhancement help wanted
#28 opened Sep 28, 2017 by rhs2132
1
Make clustering include outputs like g_cluster enhancement help wanted
#25 opened Nov 14, 2016 by j-wags
Change analyzeclustermembershipingroups to show frames starting at 1 instead of 0 enhancement help wanted
#23 opened Oct 31, 2016 by j-wags
Change inclusion cylinder to be defined as (base1x, b1y, b1z, b2x, b2y, b2z, radius) enhancement help wanted
#22 opened Oct 28, 2016 by j-wags
Make workflow work with ~10 frames from trajectory to show example before running for real enhancement help wanted
#21 opened Sep 24, 2016 by j-wags
Take care of numpy warning once and for all enhancement help wanted
#20 opened Aug 29, 2016 by j-wags
Feature color normalization causes intensities to stack up at the edge of the box enhancement help wanted
#19 opened Aug 20, 2016 by j-wags
Surface area varies a lot when I change grid resolution, even though volume stays about the same enhancement help wanted
#18 opened Aug 20, 2016 by j-wags
Add option to binding_site_overlap to output raw score matrix enhancement help wanted
#17 opened Aug 7, 2016 by j-wags
When loading an inclusion/seed region ensure that new points are snapped to a grid of appropriate resolution enhancement help wanted
#16 opened Aug 6, 2016 by j-wags
Make POVME work with DNA pockets enhancement help wanted
#15 opened Aug 5, 2016 by j-wags
Check for appropriate protonation so coloring doesn't break/we can do charge enhancement help wanted
#14 opened Aug 4, 2016 by j-wags
Fix inclusion cylinder and cube, and VMD plugin as it relates to them enhancement help wanted
#11 opened Jul 8, 2016 by j-wags
Make all subpackage integration tests be run in tests.sh enhancement help wanted
#8 opened Jul 8, 2016 by j-wags
@j-wags
Make .vmdrc file creator enhancement help wanted
#7 opened Jul 8, 2016 by j-wags
@j-wags
Convert as many tests as possible to unittest framework help wanted
#6 opened Jul 8, 2016 by j-wags
@j-wags
Replace pymolecule with something more standard (maybe mdtraj?) enhancement help wanted
#5 opened Jul 8, 2016 by j-wags
@j-wags
ProTip! Exclude everything labeled bug with -label:bug.