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Add separate environment files for micromamba installation #607

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merged 2 commits into from
Jul 10, 2024

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wrongkindofdoctor
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Description

  • add separate environent files for micromamba installation without packages that solver cannot find
  • update the micromamba build script to reference the new files
  • add notes to README and docs about differences between the conda and micromamba enviroments

Associated issue #605

How Has This Been Tested?
macOS Sonoma w/micromamba, python3

Checklist:

  • My branch is up-to-date with the NOAA-GFDL main branch, and all merge conflicts are resolved
  • The scripts are written in Python 3.11 or above (preferred; required if funded by a CPO grant), NCL, or R
  • All of my scripts are in the diagnostics/[POD short name] subdirectory, and include a main_driver script, template html, and settings.jsonc file
  • I have made corresponding changes to the documentation in the POD's doc/ subdirectory
  • I have requested that the framework developers add packages required by my POD to the python3, NCL, or R environment yaml file if necessary, and my environment builds with conda_env_setup.sh
  • I have added any necessary data to input_data/obs_data/[pod short name] and/or input_data/model/[pod short name]
  • My code is portable; it uses MDTF environment variables, and does not contain hard-coded file or directory paths
  • I have provided the code to generate digested data files from raw data files
  • Each digested data file generated by the script contains numerical data (no figures), and is 3 GB or less in size
  • I have included copies of the figures generated by the POD in the pull request
  • The repository contains no extra test scripts or data files

update the micromamba build script to reference the new files
add notes to README and docs about differences between the conda and micromamba enviroments
@wrongkindofdoctor wrongkindofdoctor added the Conda/micromamba Issues related to anaconda or (micro)mamba packages or installations label Jul 10, 2024
@wrongkindofdoctor wrongkindofdoctor self-assigned this Jul 10, 2024
@wrongkindofdoctor wrongkindofdoctor merged commit 3d20548 into NOAA-GFDL:main Jul 10, 2024
3 of 5 checks passed
@wrongkindofdoctor wrongkindofdoctor deleted the fix_conda_envs branch July 10, 2024 13:20
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2 participants