update paper compilation

Martini-Force-Field-Initiative · Sep 17, 2024 · 493875f · 493875f
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diff --git a/.github/workflows/draft-pdf.yml b/.github/workflows/draft-pdf.yml
@@ -1,5 +1,9 @@
 name: Draft PDF
-on: [push]
+on:
+  push:
+    paths:
+      - JOSS/**
+      - .github/workflows/draft-pdf.yml
 
 jobs:
   paper:
@@ -21,4 +25,4 @@ jobs:
           # This is the output path where Pandoc will write the compiled
           # PDF. Note, this should be the same directory as the input
           # paper.md
-          path: paper.pdf
+          path: JOSS/paper.pdf
diff --git a/JOSS/paper.md b/JOSS/paper.md
@@ -20,7 +20,7 @@ bibliography: paper.bib
 
 ---
 
-# Introduction
+# Statement of need
 
 Coarse-grained molecular dynamics simulations have significant advantages over higher resolution ones 
 in accessing timescales and processes that are otherwise difficult to reach 
@@ -159,7 +159,7 @@ molecular motors together with a lipid bilayer of several different lipid types.
 | Process Gō networks in proteins, as defined in nonbond.itp into separate visualisation topologies                                     | `MartiniGlass -p topol.top -go -gf nonbond.itp`                                         |
 | Write out visualisation associated files (cg_bonds-v6.tcl, vis.vmd) in the current directory                                        | `MartiniGlass -p topol.top -vf`                                         |
 
-# Conclusions
+# Summary
 
 Here, we have presented an overview of a new tool, MartiniGlass, which makes it possible to better visualise
 coarse-grained molecules from the Martini forcefield, and their simulations. A selection of how MartiniGlass