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Merge pull request #25 from Martini-Force-Field-Initiative/Final-tran…
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…sition-to-cgmartini.nl

Final transition to `cgmartini.nl`
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danielpastor97 authored Aug 21, 2024
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2 changes: 1 addition & 1 deletion docs/tutorials/Martini3/LipidsII/index.qmd
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### Summary
- [`Introduction`](#introduction)
- [`Complex mixtures with Insane`](#complex-mixtures-with-insane)
- [`Analysis — hexagonality`](#analysis-—-hexagonality)
- [`Analysis — hexagonality`](#analysis-hexagonality)
- [`Adding a new lipid headgroup: lysyl-PG`](#adding-a-new-lipid-headgroup-lysyl-pg)
- [`Creating the lysyl-PG topology`](#creating-the-lysyl-pg-topology)
- [`Adding lysyl-PG to Insane`](#adding-lysyl-pg-to-insane)
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30 changes: 15 additions & 15 deletions docs/tutorials/Martini3/lectures.qmd
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<hr>

- `Introduction to Martini 3` - *by Paulo C. T. Souza* - [[Watch]](https://youtu.be/lx8P577COfM) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Introduction_to_Martini3.pdf)
- `Introduction to Martini 3` - *by Paulo C. T. Souza* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/PCTS-Martini3.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Introduction_to_Martini3.pdf)

- `Novel applications of Martini 3` - *by Siewert-Jan Marrink* - [[Watch]](https://www.youtube.com/watch?v=A72A9s980BQ) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/SJ-martini3-applications.pdf)
- `Novel applications of Martini 3` - *by Siewert-Jan Marrink* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/SJ-martini_applications.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/SJ-martini3-applications.pdf)

- `Martini ecosystem of tools` - *by Tsjerk Wassenaar* - [[Watch]](https://youtu.be/Gvf6W0fBqwg) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Martini-Tools.pdf)
- `Martini ecosystem of tools` - *by Tsjerk Wassenaar* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/2021-08-Martini-Tools.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Martini-Tools.pdf)

- `The MArtini Database (MAD) and web server` - *by Luca Monticelli* - [[Watch]](https://youtu.be/__LDjW2hB5Q) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/MAD_server.pdf)
- `The MArtini Database (MAD) and web server` - *by Luca Monticelli* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/Martini_workshop_2021_MAD.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/MAD_server.pdf)

- `The Martini Lipids` - *by Manuel N. Melo* - [[Watch]](https://youtu.be/cMhlpwoDtg8) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/MN_Melo_Martini_lipids.pdf)
- `The Martini Lipids` - *by Manuel N. Melo* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/MN_Melo_Martini_lipids.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/MN_Melo_Martini_lipids.pdf)

- `Martini 3 Small Molecules` - *by Riccardo Alessandri* - [[Watch]](https://www.youtube.com/watch?v=PfgEx72KxVg) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/2021-09-02_MartiniWorkshop2021_Small_molecules-vFINAL.pdf)
- `Martini 3 Small Molecules` - *by Riccardo Alessandri* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/2021-09-02_MartiniWorkshop2021_Small_molecules.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/2021-09-02_MartiniWorkshop2021_Small_molecules-vFINAL.pdf)

- `Bartender` - *by Raul Mera A.* - [[Watch]](https://youtu.be/e6P79G9Z8r4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Bartender_RMera.pdf)
- `Bartender` - *by Raul Mera A.* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/Bartender_Raul.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Bartender_RMera.pdf)

- `Protein models in Martini 3` - *by Sebastian Thallmair* - [[Watch]](https://youtu.be/KDej6wt7-x8) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/M3workshop-01.pdf)
- `Protein models in Martini 3` - *by Sebastian Thallmair* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/GoModels_Sebastian.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/M3workshop-01.pdf)

- `Protein-small molecule binding with Martini 3` - *by Paulo C. T. Souza* - [[Watch]](https://www.youtube.com/watch?v=L-d2VVj5ZXo) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Protein_Small_molecule_Binding.pdf)
- `Protein-small molecule binding with Martini 3` - *by Paulo C. T. Souza* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/Protein_Small_molecule_Binding.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Protein_Small_molecule_Binding.pdf)

- `Polymer modeling with Martini 3` - *by Fabian Grünewald* - [[Watch]](https://www.youtube.com/watch?v=SwTT5QY0mgI) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/PolyplyWorkshop2021.pdf)
- `Polymer modeling with Martini 3` - *by Fabian Grünewald* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/Polyply_Fabian.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/PolyplyWorkshop2021.pdf)

- `Titratable Martini` - *by Fabian Grünewald* - [[Watch]](https://www.youtube.com/watch?v=G2V_UTccy-Y) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/TitratableMartiniWorkshop2021.pdf)
- `Titratable Martini` - *by Fabian Grünewald* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/TitratableMartini.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/TitratableMartiniWorkshop2021.pdf)

- `TS2CG` - *by Weria Pezeshkian* - [[Watch]](https://www.youtube.com/watch?v=iRL8wFIuuqE) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/weria_TS2CG.pdf)
- `TS2CG` - *by Weria Pezeshkian* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/TS2CG_Weria.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/weria_TS2CG.pdf)

- `Machine Learning-driven Multiscale Modeling` - *by Helgi I. Ingólfsson* - [[Watch]](https://www.youtube.com/watch?v=n5o9fKeVwuY) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Martini+workshop+-+MuMMI+-+Ingolfsson.pdf)
- `Machine Learning-driven Multiscale Modeling` - *by Helgi I. Ingólfsson* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/helgi_MuMMI.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Martini+workshop+-+MuMMI+-+Ingolfsson.pdf)

- `Lipid-protein interactions` - *by Peter Tieleman* - [[Watch]](https://youtu.be/R3TRYUi7x9o) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Martini-tieleman.pdf)
- `Lipid-protein interactions` - *by Peter Tieleman* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/peter.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Martini-tieleman.pdf)

- `ProLint` - *by Besian I. Sejdiu* - [[Watch]](https://www.youtube.com/watch?v=_CYrEYkP--g) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/Sejdiu_MartiniWorkshop.pptx.pdf)
- `ProLint` - *by Besian I. Sejdiu* - [[Watch]](https://d3ebrx6qufncts.cloudfront.net/0_Tutorials/Lectures/videos/besian.mp4) [[Slides]](https://cgmartini-library.s3.ca-central-1.amazonaws.com/0_Tutorials/Lectures/pdfs/Sejdiu_MartiniWorkshop.pptx.pdf)

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