Update deploy action for OIDC #200
Workflow file for this run
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| name: GH Actions CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| schedule: | |
| # 3 am Tuesdays and Fridays | |
| - cron: "0 3 * * 2,5" | |
| concurrency: | |
| group: "${{ github.ref }}-${{ github.head_ref }}-${{ github.workflow }}" | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| unittests: | |
| if: "github.repository == 'MDAnalysis/panedr'" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, ] | |
| python-version: ["3.6", "3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
| include: | |
| - os: windows-latest | |
| python-version: "3.12" | |
| - os: macos-latest | |
| python-version: "3.12" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: setup_miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| auto-update-conda: true | |
| channel-priority: flexible | |
| channels: conda-forge | |
| add-pip-as-python-dependency: true | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| - name: install package deps | |
| run: | | |
| mamba install pytest pytest-xdist pytest-cov codecov pbr numpy tqdm | |
| - name: check install | |
| run: | | |
| which python | |
| which pip | |
| conda info | |
| conda list | |
| - name: install pyedr package | |
| run: | | |
| # installing via pip leads to codecov not being able to report coverage | |
| cd pyedr && python setup.py develop | |
| - name: run pyedr tests | |
| run: | | |
| pytest -n 2 -v --cov=pyedr/pyedr --cov-report=xml --color=yes pyedr/pyedr/tests | |
| - name: install panedr package | |
| run: | | |
| mamba install pandas | |
| cd panedr && python setup.py develop | |
| - name: run panedr tests | |
| run: | | |
| pytest -n2 -v --cov=panedr/panedr --cov-report=xml --color=yes --cov-append panedr/panedr/tests | |
| - name: test imports | |
| # Exit the git repo in order for pbr to stop auto-picking up version info | |
| # from the local git data | |
| working-directory: ../ | |
| run: | | |
| python -Ic "from pyedr import edr_to_dict" | |
| python -Ic "from panedr import edr_to_df" | |
| - name: codecov | |
| if: ${{ github.event_name != 'schedule' }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| fail_ci_if_error: True | |
| verbose: True |