Update ImagingStudy.java #4819
Workflow file for this run
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| name: Integration | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - '**.md' | |
| - 'docs/**' | |
| - 'demo/**' | |
| - '.github/workflows/site.yml' | |
| jobs: | |
| e2e-postgres: | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.pull_request.labels.*.name, 'ci-skip')" | |
| strategy: | |
| matrix: | |
| java: [ '11' ] | |
| environment: [ 'minio', 'azurite' ] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: ${{ matrix.java }} | |
| cache: 'maven' | |
| - name: Build samples | |
| run: mvn -B install --file fhir-examples --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build parent without tests | |
| run: | | |
| mvn -B org.apache.maven.plugins:maven-dependency-plugin:3.1.2:go-offline -f fhir-parent -DexcludeReactor=true -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B org.apache.maven.plugins:maven-dependency-plugin:3.1.2:resolve-plugins -f fhir-parent -DexcludeReactor=true -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B install --file fhir-parent -DskipTests -P include-fhir-igs,integration --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| docker build fhir-install --build-arg VERBOSE=false -t linuxforhealth/fhir-server | |
| - name: free disk space | |
| run: | | |
| # create and remove a 200 MB file to make sure we have the room needed later | |
| dd if=/dev/urandom oflag=direct of=balloon.dat bs=1024k count=200 | |
| rm -f balloon.dat | |
| sudo apt clean | |
| docker system prune -f | |
| df -h | |
| - name: Server Integration Tests | |
| run: | | |
| # github actions lets you set this on re-run to diagnose the test failure | |
| # so we tap into that here to have each line of our scripts printed | |
| if [ -n "${{ secrets.ACTIONS_STEP_DEBUG }}" ]; then | |
| set -x | |
| export SHELLOPTS | |
| fi | |
| build/pre-integration-test-docker.sh ${{ matrix.environment }} | |
| mvn -B test -DskipTests=false -f fhir-server-test --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| build/post-integration-test-docker.sh ${{ matrix.environment }} | |
| - name: Gather error logs | |
| if: failure() | |
| run: | | |
| it_results=integration-test-results | |
| rm -fr ${it_results} 2>/dev/null | |
| mkdir -p ${it_results}/server-logs | |
| mkdir -p ${it_results}/fhir-server-test | |
| containerId=$(docker ps -a | grep fhir | cut -d ' ' -f 1) | |
| if [[ -z "${containerId}" ]]; then | |
| echo "Warning: Could not find fhir container!!!" | |
| else | |
| echo "fhir container id: $containerId" | |
| # Grab the container's console log | |
| docker logs $containerId >& ${it_results}/docker-console.txt | |
| echo "Gathering post-test server logs from docker container: $containerId" | |
| docker cp -L $containerId:/logs ${it_results}/server-logs | |
| fi | |
| echo "Gathering integration test output" | |
| cp -r ${GITHUB_WORKSPACE}/fhir-server-test/target/surefire-reports/* ${it_results}/fhir-server-test || true | |
| - name: Upload logs | |
| if: always() | |
| uses: actions/[email protected] | |
| with: | |
| name: integration-test-results-${{ matrix.java }}-${{ matrix.environment }} | |
| path: integration-test-results | |
| concurrency: | |
| group: integration-${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true |