Merge pull request #160 in SUNDIALS/sunrepo from release-4.0.1 to master

* commit '1edf17119120da9d303b3adc8fb9979a5805de3c': only enable arkode F90_parallel example if double precision remove bugfix steps from release checklist bump version numbers to 4.0.1/3.0.1
LLNL · Dec 18, 2018 · 61d517a · 61d517a
2 parents d6601d5 + 1edf171
commit 61d517a
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diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -45,14 +45,14 @@ PROJECT(sundials C)
 # Set some variables with info on the SUNDIALS project
 SET(PACKAGE_BUGREPORT "[email protected]")
 SET(PACKAGE_NAME "SUNDIALS")
-SET(PACKAGE_STRING "SUNDIALS 4.0.0")
+SET(PACKAGE_STRING "SUNDIALS 4.0.1")
 SET(PACKAGE_TARNAME "sundials")
 
 # set SUNDIALS version numbers
 # (use "" for the version label if none is needed)
 SET(PACKAGE_VERSION_MAJOR "4")
 SET(PACKAGE_VERSION_MINOR "0")
-SET(PACKAGE_VERSION_PATCH "0")
+SET(PACKAGE_VERSION_PATCH "1")
 SET(PACKAGE_VERSION_LABEL "")
 
 IF(PACKAGE_VERSION_LABEL)
@@ -515,8 +515,7 @@ ELSE()
   HIDE_VARIABLE(EXAMPLES_ENABLE_F77)
 ENDIF()
 
-# F90 examples (on by default) are an option only if ARKode or CVODE is
-# built and a Fortran interface is enabled.
+# F90 examples (on by default) are an option only if a Fortran interface is enabled.
 SET(DOCSTR "Build SUNDIALS F90 examples")
 IF(F77_INTERFACE_ENABLE OR F2003_INTERFACE_ENABLE)
   SHOW_VARIABLE(EXAMPLES_ENABLE_F90 BOOL "${DOCSTR}" ON)

diff --git a/README.md b/README.md
@@ -68,6 +68,7 @@ your question to the SUNDIALS [mailing list](https://computation.llnl.gov/projec
 ## Release History ##
 Date     | SUNDIALS    | ARKODE      | CVODE       | CVODES      | IDA         | IDAS        | KINSOL
 ---------|-------------|-------------|-------------|-------------|-------------|-------------|-------------
+Dec 2018 | 4.0.1       | 3.0.1       | 4.0.1       | 4.0.1       | 4.0.1       | 3.0.1       | 4.0.1
 Dec 2018 | 4.0.0       | 3.0.0       | 4.0.0       | 4.0.0       | 4.0.0       | 3.0.0       | 4.0.0
 Oct 2018 | 3.2.1       | 2.2.1       | 3.2.1       | 3.2.1       | 3.2.1       | 2.2.1       | 3.2.1
 Sep 2018 | 3.2.0       | 2.2.0       | 3.2.0       | 3.2.0       | 3.2.0       | 2.2.0       | 3.2.0

diff --git a/README_DEV b/README_DEV
@@ -177,6 +177,7 @@ RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)
 2.2.0     3.2.0               3:0:0           3.0.0
 2.2.1     3.2.1               3:0:0           3.0.0
 3.0.0     4.0.0               4:0:0           4.0.0
+3.0.1     4.0.1               4:0:1           4.0.1
 
 CVODE
 RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
@@ -190,6 +191,7 @@ RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)
 3.2.0     3.2.0               3:0:0           3.0.0
 3.2.1     3.2.1               3:0:0           3.0.0
 4.0.0     4.0.0               4:0:0           4.0.0
+4.0.1     4.0.1               4:0:1           4.0.1
 
 CVODES
 RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
@@ -203,6 +205,7 @@ RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)
 3.2.0     3.2.0               3:0:0           3.0.0
 3.2.1     3.2.1               3:0:0           3.0.0
 4.0.0     4.0.0               4:0:0           4.0.0
+4.0.1     4.0.1               4:0:1           4.0.1
 
 IDA
 RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
@@ -216,6 +219,7 @@ RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)
 3.2.0     3.2.0               3:0:0           3.0.0
 3.2.1     3.2.1               3:0:0           3.0.0
 4.0.0     4.0.0               4:0:0           4.0.0
+4.0.1     4.0.1               4:0:1           4.0.1
 
 IDAS
 RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
@@ -227,6 +231,7 @@ RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)
 2.2.0     3.2.0               3:0:0           3.0.0
 2.2.1     3.2.1               3:0:0           3.0.0
 3.0.0     4.0.0               4:0:0           4.0.0
+3.0.1     4.0.1               4:0:1           4.0.1
 
 KINSOL
 RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
@@ -240,29 +245,4 @@ RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)
 3.2.0     3.2.0               3:0:0           3.0.0
 3.2.1     3.2.1               3:0:0           3.0.0
 4.0.0     4.0.0               4:0:0           4.0.0
-
-NVEC_SER
-RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
-2.2.0     2.2.0               0:0:0           0.0.0
-2.3.0     2.3.0               0:1:0           0.0.1
-2.4.0     2.4.0               0:2:0           0.0.2
-3.0.0     3.0.0               3:0:0           3.0.0
-3.1.0     3.1.0               3:0:0           3.0.0
-3.1.1     3.1.1               3:0:0           3.0.0
-3.1.2     3.1.2               3:0:0           3.0.0
-3.2.0     3.2.0               3:0:0           3.0.0
-3.2.1     3.2.1               3:0:0           3.0.0
-4.0.0     4.0.0               4:0:0           4.0.0
-
-NVEC_PAR
-RELEASE   SUNDIALS RELEASE    LIBTOOL VER.    LIB FILE (Linux)  
-2.2.0     2.2.0               0:0:0           0.0.0
-2.3.0     2.3.0               0:1:0           0.0.1
-2.4.0     2.4.0               0:2:0           0.0.2
-3.0.0     3.0.0               3:0:0           3.0.0
-3.1.0     3.1.0               3:0:0           3.0.0
-3.1.1     3.1.1               3:0:0           3.0.0
-3.1.2     3.1.2               3:0:0           3.0.0
-3.2.0     3.2.0               3:0:0           3.0.0
-3.2.1     3.2.1               3:0:0           3.0.0
-4.0.0     4.0.0               4:0:0           4.0.0
+4.0.1     4.0.1               4:0:1           4.0.1
diff --git a/Release_Checklist.txt b/Release_Checklist.txt
@@ -4,23 +4,11 @@ This is a list of tasks that need to be done before a SUNDIALS release.
 The order is bottom-up-- starting with solver source files, and ending with
 web pages.
 
-0. Create release branch from trunk in the Subversion repository
+0. Create release branch from trunk in the Git repository
 
-1. Bug fixes - C solvers
+1. Update the "Changes in ..." sections in all user guides.
 
-2. Bug fixes - Matlab (This is no longer maintained as of 2016)
-
-3. Bug fixes - installation
-
-4. Documentation fixes
-
-5. Bug fixes - examples
-
-6. Misc. source file fixes
-
-7. Update the "Changes in ..." sections in all user guides.
-
-8. Update README file in src/<solver>, with version
+2. Update README file in src/<solver>, with version
    number and release dates at the top and bottom
    of the file.
     src/arkode/README
@@ -30,10 +18,10 @@ web pages.
     src/idas/README
     src/kinsol/README
 
-9. Update version numbers of third party libraries in Install Guide
+3. Update version numbers of third party libraries in Install Guide
    in doc directory.
 
-10. Update version numbers in source code, documentation, and tarscripts.
+4. Update version numbers in source code, documentation, and tarscripts.
     doc/arkode/ARKode_example.tex
     doc/arkode/ARKode.tex
     doc/arkode/SphinxDocs/examples/source/conf.py
@@ -46,13 +34,13 @@ web pages.
     README.md
     README_DEV
 
-11. Create the tarballs
+5. Create the tarballs
    Create the new distribution tarballs using the "tarscript" shell script
    under scripts/.  This also compiles the documents (user guides and example
    docs) and creates all tarballs in their final form, appropriate for
    uploading to the website.
 
-12. Update Internal Drupal Web pages for SUNDIALS:
+6. Update Internal Drupal Web pages for SUNDIALS:
      https://computation-external.llnl.gov/user
 
   a) Modify content (save edits on each page as you go)
@@ -87,10 +75,10 @@ web pages.
       required review then Save.  This must be done for each page and is the
       final action before pages are uploaded for external release.
 
-13. After final push, ensure web content and behavior is as expected:
+7. After final push, ensure web content and behavior is as expected:
        + Main Page: http://computation.llnl.gov/projects/sundials
 
-14. Tag the release in the release branch in the Subversion repository
+8. Tag the release in the release branch in the Subversion repository
 
 
 

diff --git a/doc/arkode/ARKode.tex b/doc/arkode/ARKode.tex
@@ -55,8 +55,8 @@
 \clearpage
 }
 
-\title{User Documentation for ARKode v3.0.0\\
-       (SUNDIALS v4.0.0)}
+\title{User Documentation for ARKode v3.0.1\\
+       (SUNDIALS v4.0.1)}
 \author{
   Daniel R. Reynolds$^1$, David J. Gardner$^2$, \\
   Alan C. Hindmarsh$^2$, Carol S. Woodward$^2$ \\

diff --git a/doc/arkode/ARKode_example.tex b/doc/arkode/ARKode_example.tex
@@ -67,7 +67,7 @@
   {\centerline{\includegraphics[width=0.5\textwidth]{doc_logo_blue.pdf}}}
   \vfill
 }
-\release{3.0.0}
+\release{3.0.1}
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 

diff --git a/doc/arkode/SphinxDocs/examples/source/conf.py b/doc/arkode/SphinxDocs/examples/source/conf.py
@@ -49,9 +49,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '3.0.0'
+version = '3.0.1'
 # The full version, including alpha/beta/rc tags.
-release = '3.0.0'
+release = '3.0.1'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
@@ -294,7 +294,7 @@
 #  dir menu entry, description, category)
 texinfo_documents = [
   ('index', 'ARKode_example', u'ARKode Example Documentation',
-   u'Daniel R. Reynolds', 'ARKode_example', 
+   u'Daniel R. Reynolds', 'ARKode_example',
    'Example programs for the ARKode time integration package for multi-rate systems of ordinary differntial equations.',
    'Miscellaneous'),
 ]

diff --git a/doc/cvode/cv_intro.tex b/doc/cvode/cv_intro.tex
@@ -99,6 +99,10 @@ \section{Historical Background}\label{ss:history}
 
 \section{Changes from previous versions}
 
+\subsection*{Changes in v4.0.1}
+
+No changes were made in this release.
+
 \subsection*{Changes in v4.0.0}
 
 {\cvode}'s previous direct and iterative linear solver interfaces,

diff --git a/doc/cvodes/cvs_intro.tex b/doc/cvodes/cvs_intro.tex
@@ -117,6 +117,10 @@ \section{Historical Background}\label{ss:history}
 
 \section{Changes from previous versions}
 
+\subsection*{Changes in v4.0.1}
+
+No changes were made in this release.
+
 \subsection*{Changes in v4.0.0}
 
 {\cvodes}' previous direct and iterative linear solver interfaces,

diff --git a/doc/ida/ida_intro.tex b/doc/ida/ida_intro.tex
@@ -66,6 +66,10 @@ \chapter{Introduction}\label{s:intro}
 
 \section{Changes from previous versions}
 
+\subsection*{Changes in v4.0.1}
+
+No changes were made in this release.
+
 \subsection*{Changes in v4.0.0}
 
 {\ida}'s previous direct and iterative linear solver interfaces,

diff --git a/doc/idas/idas_intro.tex b/doc/idas/idas_intro.tex
@@ -87,6 +87,10 @@ \chapter{Introduction}\label{s:intro}
 
 \section{Changes from previous versions}
 
+\subsection*{Changes in v3.0.1}
+
+No changes were made in this release.
+
 \subsection*{Changes in v3.0.0}
 
 {\idas}' previous direct and iterative linear solver interfaces,

diff --git a/doc/kinsol/kin_intro.tex b/doc/kinsol/kin_intro.tex
@@ -109,6 +109,10 @@ \section{Historical Background}\label{ss:history}
 
 \section{Changes from previous versions}
 
+\subsection*{Changes in v4.0.1}
+
+No changes were made in this release.
+
 \subsection*{Changes in v4.0.0}
 
 {\kinsol}'s previous direct and iterative linear solver interfaces,

diff --git a/doc/sundials/biblio.bib b/doc/sundials/biblio.bib
@@ -16,7 +16,7 @@
 @techreport{arkode_ug,
 author={Daniel R. Reynolds and David J. Gardner and Alan C. Hindmarsh 
 and Carol S. Woodward and Jean M. Sexton},
-title={{User Documentation for ARKODE v3.0.0}},
+title={{User Documentation for ARKODE v3.0.1}},
 institution={LLNL},
 number={LLNL-SM-668082},
 year=2018
@@ -26,7 +26,7 @@ @techreport{arkode_ug
 %
 @techreport{arkode_ex,
 author={Daniel R. Reynolds},
-title={{Example Programs for ARKODE v3.0.0}},
+title={{Example Programs for ARKODE v3.0.1}},
 institution={Southern Methodist University},
 year=2018
 }
@@ -35,7 +35,7 @@ @techreport{arkode_ex
 %
 @techreport{cvode_ug,
 author={A. C. Hindmarsh and R. Serban},
-title={{User Documentation for CVODE v4.0.0}},
+title={{User Documentation for CVODE v4.0.1}},
 institution={LLNL},
 number={UCRL-SM-208108},
 year=2018
@@ -45,7 +45,7 @@ @techreport{cvode_ug
 %
 @techreport{cvode_ex,
 author={A. C. Hindmarsh and R. Serban and D. R. Reynolds},
-title={{Example Programs for CVODE v4.0.0}},
+title={{Example Programs for CVODE v4.0.1}},
 institution={LLNL},
 note={UCRL-SM-208110},
 year=2018
@@ -55,7 +55,7 @@ @techreport{cvode_ex
 %
 @techreport{cvodes_ug,
 author={A. C. Hindmarsh and R. Serban},
-title={{User Documentation for CVODES v4.0.0}},
+title={{User Documentation for CVODES v4.0.1}},
 institution={LLNL},
 note={UCRL-SM-208111},
 year=2018
@@ -65,7 +65,7 @@ @techreport{cvodes_ug
 %
 @techreport{cvodes_ex,
 author={R. Serban and A. C. Hindmarsh},
-title={{Example Programs for CVODES v4.0.0}},
+title={{Example Programs for CVODES v4.0.1}},
 institution={LLNL},
 number={UCRL-SM-208115},
 year=2018
@@ -75,7 +75,7 @@ @techreport{cvodes_ex
 %
 @techreport{ida_ug,
 author={A. C. Hindmarsh and R. Serban and A. Collier},
-title={{User Documentation for IDA v4.0.0}},
+title={{User Documentation for IDA v4.0.1}},
 institution={LLNL},
 number={UCRL-SM-208112},
 year=2018
@@ -85,7 +85,7 @@ @techreport{ida_ug
 %
 @techreport{ida_ex,
 author={A. C. Hindmarsh and R. Serban and A. Collier},
-title={{Example Programs for IDA v4.0.0}},
+title={{Example Programs for IDA v4.0.1}},
 institution={LLNL},
 number={UCRL-SM-208113},
 year=2018
@@ -95,7 +95,7 @@ @techreport{ida_ex
 %
 @techreport{idas_ug,
 author={R. Serban and C. Petra and A. C. Hindmarsh},
-title={{User Documentation for IDAS v3.0.0}},
+title={{User Documentation for IDAS v3.0.1}},
 institution={LLNL},
 number={UCRL-SM-234051},
 year=2018
@@ -105,7 +105,7 @@ @techreport{idas_ug
 %
 @techreport{idas_ex,
 author={R. Serban and A. C. Hindmarsh},
-title={{Example Programs for IDAS v3.0.0}},
+title={{Example Programs for IDAS v3.0.1}},
 institution={LLNL},
 number={LLNL-TR-437091},
 year=2018
@@ -115,7 +115,7 @@ @techreport{idas_ex
 %
 @techreport{kinsol_ug,
 author={A. M. Collier and A. C. Hindmarsh and R. Serban and C.S. Woodward},
-title={{User Documentation for KINSOL v4.0.0}},
+title={{User Documentation for KINSOL v4.0.1}},
 institution={LLNL},
 number={UCRL-SM-208116},
 year=2018
@@ -125,7 +125,7 @@ @techreport{kinsol_ug
 %
 @techreport{kinsol_ex,
 author={A. M. Collier and R. Serban},
-title={{Example Programs for KINSOL v4.0.0}},
+title={{Example Programs for KINSOL v4.0.1}},
 institution={LLNL},
 number={UCRL-SM-208114},
 year=2018