Pang2020 Scripts for statistics and figures plotting in "Mapping mouse brain metabolome with targeted metabolomics analysis", submitted in BioRxiv 2020.
/data # metadata, OTU table and taxonomy files /fig1-2 # raw data, Rmarkdown scripts and output HTML format results supplementary figX/figX.Rmd # X is number 1-6, including the reproducable R scripts for each panel in figure figX/figX.html # Readability report by R markdown, include annotations, scripts and figures script/ # General R scripts used in this study
If you used these scripts, please cited the paper below:
Huanhuan Pang1#, Jun-Liszt Li2,3# , Xiao-Ling Hu3,4, Fei Chen5,6, Xiaofei Gao6, Lauren G. Zacharias6, Feng Cai6, Ralph J. DeBerardinis6,7, Wenzhi Sun3,4*, Zeping Hu1,, Woo-ping Ge3,6 "Mapping mouse brain metabolome with targeted metabolomics analysis", BioRxiv 2020 (https://www.biorxiv.org/content/10.1101/2020.12.28.424544v1)
Shiny app for browsing the brain metabolome atlas: https://leoj.shinyapps.io/brain_metabolome_atlas/
Developed by Jun-Liszt Li([email protected]), Woo-Ping Ge & Wenzhi Sun lab, PKU-CIBR
updated log, 2022-07-09 I have updated the shiny viewer of our brain metabolome atlas work named BSMAv1. Click and have a look. https://leoj.shinyapps.io/BSMAv1_updated/