Installing MDANSE from source on ubuntu@focal using conda pip

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eurydice76 edited this page Apr 4, 2022 · 2 revisions

This wiki summarizes the different steps needed for installing MDANSE from source on ubuntu focal (20.04) using conda.

Prerequesites:

conda installed
gcc, g++ installed

First install NetCDF alongside with its headers:

sudo apt install libnetcdf-dev
sudo updatedb

Then create the mdanse conda environment:

conda create -n mdanse python=2.7
conda install -n mdanse -c ccordoba12 vtk
conda install -n mdanse -c daf wxpython
conda install -n mdanse matplotlib
conda install -n mdanse cython
conda activate mdanse
pip install pyro

Clone the ScientificPython directory and install it under the mdanse venv:

git clone [email protected]:scientific-software/scientific-python.git
cd scientific-python
python setup.py build --netcdf_prefix=/usr
python setup.py install
cd ..

Clone the MMTK directory and install it under the mdanse venv:

git clone [email protected]:scientific-software/mmtk.git
cd mmtk
python setup.py build
python setup.py install
cd ..

Clone the MDANSE directory and install it under the mdanse venv:

git clone [email protected]:ISISNeutronMuon/MDANSE.git
cd MDANSE
python setup.py build
python setup.py install
cd ..