Finish porting all tests to GitHub Actions #46
Workflow file for this run
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| name: Build and test | |
| # Build on every branch push, tag push, and pull request change: | |
| on: [push] | |
| jobs: | |
| build_wheels: | |
| name: Build and test shark on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| env: | |
| CI_BUILD_DIR: build | |
| TEST_INPUTS_DIR: inputs | |
| TEST_OUTPUTS_DIR: outputs | |
| TEST_SIM_NAME: mini-SURFS | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Install system dependencies (Linux) | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt install ninja-build libhdf5-dev hdf5-tools libboost-filesystem-dev libboost-program-options-dev libboost-log-dev cxxtest libgsl-dev | |
| - name: Install system dependencies (MacOS) | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| run: | | |
| brew install ninja hdf5 boost cxxtest gsl libomp | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install Python dependencies | |
| run: pip install matplotlib h5py scipy | |
| - name: Configure | |
| # Leaving Werror out for now because there *are* errors | |
| # and I don't know what the proper fix is. | |
| run: cmake -B ${CI_BUILD_DIR} -G Ninja -DSHARK_TEST=ON -DCMAKE_CXX_FLAGS="-Wall" #-Werror | |
| - name: Build | |
| run: cmake --build ${CI_BUILD_DIR} | |
| - name: Run unit tests | |
| run: | | |
| cd ${CI_BUILD_DIR} | |
| ctest --output-on-failure | |
| - name: Prepare test dataset | |
| run: | | |
| mkdir -p ${TEST_INPUTS_DIR} | |
| curl -L -o ${TEST_INPUTS_DIR}/redshifts.txt 'https://docs.google.com/uc?export=download&id=1xvNmJB_KmoBHuQz-QzdPnY0HFs7smkUB' | |
| curl -L -o ${TEST_INPUTS_DIR}/tree_199.0.hdf5 'https://docs.google.com/uc?export=download&id=1JDK8ak13bEhzg9H9xt0uE8Fh_2LD3KpZ' | |
| sed " | |
| s|output_directory.*|output_directory = ${TEST_OUTPUTS_DIR}| | |
| s|redshift_file.*|redshift_file = ${TEST_INPUTS_DIR}/redshifts.txt| | |
| s|tree_files_prefix.*|tree_files_prefix = ${TEST_INPUTS_DIR}/tree_199| | |
| s|sim_name.*|sim_name = ${TEST_SIM_NAME}| | |
| " sample.cfg > ci-test.cfg | |
| - name: Run shark with fixed seed | |
| run: .ci/run_shark.sh my_model -o execution.seed=123456 | |
| - name: Check output properties' documentation | |
| run: | | |
| .ci/check_hdf5_docs.sh my_model/199/0/galaxies.hdf5 galaxies.rst | |
| .ci/check_hdf5_docs.sh my_model/156/0/star_formation_histories.hdf5 star_formation_histories.rst | |
| .ci/check_hdf5_docs.sh my_model/199/0/black_hole_histories.hdf5 black_hole_histories.rst | |
| - name: Check fixed seed is reproducible | |
| run: | | |
| .ci/run_shark.sh my_model_same_seed -o execution.seed=123456 | |
| .ci/compare_galaxies.sh my_model my_model_same_seed | |
| - name: Check fixed seed is reproducible when multithreaded | |
| run: | | |
| # "-t 0" lets shark use the maximum number of OpenMP threads, | |
| # which OpenMP implementations usually constrain to the available hardware | |
| .ci/run_shark.sh my_model_same_seed_parallel -o execution.seed=123456 -t 0 | |
| .ci/compare_galaxies.sh my_model my_model_same_seed_parallel | |
| - name: Check random seed gives different results | |
| run: | | |
| .ci/run_shark.sh my_model_random_seed -t 0 | |
| .ci/compare_galaxies.sh my_model my_model_random_seed --expect-unequal | |
| # Currently skipped because there are a few minor problems | |
| # with some plots | |
| - name: Generate all plots | |
| if: false | |
| run: | | |
| echo "backend: Agg" >> matplotlibrc | |
| python standard_plots/all.py -c ci-test.cfg |