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Resize images in README (#110)
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jrm5100 authored Jul 12, 2021
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Expand Up @@ -41,10 +41,29 @@ CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures
* Free software: 3-clause BSD license
* Documentation: https://www.hall-lab.org/clarite-python/.

Examples
--------

**Run an EWAS in a few lines of code**

.. image:: docs/source/_static/code/quick_ewas.png

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**More realistically, perform some QC first:**

.. image:: docs/source/_static/code/filters.png

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**Genotype data is supported via Pandas-Genomics**

.. image:: docs/source/_static/code/gwas.png

Installation
------------

In order to use the *survey_r* regression_kind in the *ewas* function, R must be installed along with the *survey* library.
In order to use the *r_survey* regression_kind in the *ewas* function, R must be installed along with the *survey* library.

1. Install R and ensure it is accessible from the command line. You may need to add its location to the PATH environmental variable.
2. Use *install.packages* in R to install the *survey* library.
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