Skip to content

Snakemake profiles for the lab servers and Great Lakes HPC

Notifications You must be signed in to change notification settings

Geo-omics/snakemake_profiles

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

11 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Snakemake profiles for the geomicro lab servers and Great Lakes HPC at the University of Michigan

Each directory contains a config file with parameters for each server (e.g. available CPUs and memory). Profiles can be invoked using snakemake [files or rules] --profile [path to profile directory]

Note: Snakemake version 8 included major refactoring that among other things changed the underlying framework for handling job submission. It also requires major changes to the profile configuration file. Profiles for Snakemake version 8+ have been added and end in "8". They have been confirmed to work but have not been used as extensively as other profiles. Please open an issue for any profile related errors you encounter.

About

Snakemake profiles for the lab servers and Great Lakes HPC

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages