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See if we need TCPKeepAlive, fix GFF3 name
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garrettjstevens committed Oct 8, 2024
1 parent bf72761 commit be0778b
Showing 1 changed file with 2 additions and 3 deletions.
5 changes: 2 additions & 3 deletions .github/workflows/reload_demo_data.yml
Original file line number Diff line number Diff line change
Expand Up @@ -46,10 +46,8 @@ jobs:
HostName ${{ steps.ec2-describe-instances.outputs.INSTANCE_ADDRESS }}
User ec2-user
IdentityFile ~/.ssh/staging
LogLevel VERBOSE
ServerAliveInterval 60
ServerAliveCountMax 10
TCPKeepAlive no
END
ssh-keyscan -H ${{ steps.ec2-describe-instances.outputs.INSTANCE_ADDRESS }} >> ~/.ssh/known_hosts
- name: Create Docker context
Expand All @@ -74,6 +72,7 @@ jobs:
"$@"
}
set -x
apollo config address http://host.docker.internal/apollo
apollo config accessType root
apollo config rootCredentials.username ${{ secrets.ROOT_USER_NAME }}
Expand Down Expand Up @@ -106,5 +105,5 @@ jobs:
apollo feature \
import \
--input-file /data/schistosoma_mansoni.PRJEA36577.WBPS19.annotations.genes.gff3 \
--input-file /data/schistosoma_haematobium.TD2_PRJEB44434.WBPS19.annotations.genes.gff3 \
--assembly 'Schistosoma haematobium'

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