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FynnBe · Aug 18, 2023 · 769db3a · 769db3a
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commit 769db3a
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Showing 36 changed files with 699 additions and 699 deletions.
diff --git a/rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml b/rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml
@@ -98,31 +98,32 @@ tests:
           cannot unload model', Computed dataset percentiles naively by averaging
           percentiles of samples., 'Model tensorflow version (1, 15) does not match
           1.14.0.The prediction results may be wrong']
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: load resource description
+    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: '''str'' object has no attribute ''decode'''
     name: reproduce test outputs from test inputs
     status: failed
@@ -141,32 +142,31 @@ tests:
     warnings:
       non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The
           prediction results may be wrong']
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: load resource description
-    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: '''str'' object has no attribute ''decode'''
     name: reproduce test outputs from test inputs
     status: failed

diff --git a/rdfs/10.5281/zenodo.5749843/5888237/test_summary.yaml b/rdfs/10.5281/zenodo.5749843/5888237/test_summary.yaml
@@ -108,31 +108,32 @@ tests:
           cannot unload model', Computed dataset percentiles naively by averaging
           percentiles of samples., 'Model tensorflow version (1, 15) does not match
           1.14.0.The prediction results may be wrong']
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: load resource description
+    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: '''str'' object has no attribute ''decode'''
     name: reproduce test outputs from test inputs
     status: failed
@@ -149,36 +150,35 @@ tests:
         custom_objects, compile)\n", "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/hdf5_format.py\",
         line 210, in load_model_from_hdf5\n    model_config = json.loads(model_config.decode('utf-8'))\n"]
     warnings:
-      non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The
-          prediction results may be wrong', 'Passing (type, 1) or ''1type'' as a synonym
-          of type is deprecated; in a future version of numpy, it will be understood
-          as (type, (1,)) / ''(1,)type''.']
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+      non-validation-warnings: ['Passing (type, 1) or ''1type'' as a synonym of type
+          is deprecated; in a future version of numpy, it will be understood as (type,
+          (1,)) / ''(1,)type''.', 'Model tensorflow version (1, 15) does not match
+          1.14.0.The prediction results may be wrong']
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: load resource description
-    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: '''str'' object has no attribute ''decode'''
     name: reproduce test outputs from test inputs
     status: failed
@@ -195,7 +195,7 @@ tests:
         custom_objects, compile)\n", "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/hdf5_format.py\",
         line 210, in load_model_from_hdf5\n    model_config = json.loads(model_config.decode('utf-8'))\n"]
     warnings:
-      non-validation-warnings: ['Passing (type, 1) or ''1type'' as a synonym of type
-          is deprecated; in a future version of numpy, it will be understood as (type,
-          (1,)) / ''(1,)type''.', 'Model tensorflow version (1, 15) does not match
-          1.14.0.The prediction results may be wrong']
+      non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The
+          prediction results may be wrong', 'Passing (type, 1) or ''1type'' as a synonym
+          of type is deprecated; in a future version of numpy, it will be understood
+          as (type, (1,)) / ''(1,)type''.']
diff --git a/rdfs/10.5281/zenodo.5764892/6322939/test_summary.yaml b/rdfs/10.5281/zenodo.5764892/6322939/test_summary.yaml
@@ -101,105 +101,106 @@ tests:
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: load resource description
-    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
-    error: No module named 'onnxruntime'
-    name: reproduce test outputs from test inputs
-    status: failed
-    traceback: ["  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\",
-        line 157, in _test_model_inference\n    bioimageio_model=model, devices=devices,
-        weight_format=weight_format\n", "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\",
-        line 205, in create_prediction_pipeline\n    bioimageio_model=bioimageio_model,
-        devices=devices, weight_format=weight_format\n", "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\",
-        line 132, in create_model_adapter\n    adapter_cls = _get_model_adapter(weight)\n",
-      "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\",
-        line 157, in _get_model_adapter\n    from ._onnx_model_adapter import ONNXModelAdapter\n",
-      "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\",
-        line 5, in <module>\n    import onnxruntime as rt\n"]
-    warnings: {}
   - bioimageio_core_version: 0.5.7
     bioimageio_spec_version: 0.4.8
     error: null
+    name: reproduce test outputs from test inputs
+    status: passed
+    traceback: null
+    warnings: {}
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
+    error: null
     name: load resource description
+    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: reproduce test outputs from test inputs
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: load resource description
+    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.7
-    bioimageio_spec_version: 0.4.8
-    error: null
+  - bioimageio_core_version: 0.5.8
+    bioimageio_spec_version: 0.4.9
+    error: No module named 'onnxruntime'
     name: reproduce test outputs from test inputs
-    status: passed
-    traceback: null
+    status: failed
+    traceback: ["  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\",
+        line 157, in _test_model_inference\n    bioimageio_model=model, devices=devices,
+        weight_format=weight_format\n", "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\",
+        line 205, in create_prediction_pipeline\n    bioimageio_model=bioimageio_model,
+        devices=devices, weight_format=weight_format\n", "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\",
+        line 132, in create_model_adapter\n    adapter_cls = _get_model_adapter(weight)\n",
+      "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\",
+        line 157, in _get_model_adapter\n    from ._onnx_model_adapter import ONNXModelAdapter\n",
+      "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\",
+        line 5, in <module>\n    import onnxruntime as rt\n"]
     warnings: {}
   - bioimageio_core_version: 0.5.7
     bioimageio_spec_version: 0.4.8
@@ -240,32 +241,31 @@ tests:
       "  File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\",
         line 5, in <module>\n    import onnxruntime as rt\n"]
     warnings: {}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: load resource description
-    nested_errors: null
     status: passed
     traceback: null
     warnings: {}
   - {error: null, name: has expected resource type, status: passed, traceback: null}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: All URLs and paths available
     nested_errors: null
     status: passed
     traceback: null
     warnings: {}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: Test documentation completeness.
     status: passed
     traceback: null
     warnings: {documentation: No '# Validation' (sub)section found.}
-  - bioimageio_core_version: 0.5.8
-    bioimageio_spec_version: 0.4.9
+  - bioimageio_core_version: 0.5.7
+    bioimageio_spec_version: 0.4.8
     error: null
     name: reproduce test outputs from test inputs
     status: passed