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FynnBe committed Oct 26, 2023
1 parent 839c959 commit 65e2837
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69 changes: 40 additions & 29 deletions rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
bioimageio_core_version: 0.5.9
bioimageio_spec_version: 0.4.9.post4
rdf_sha256: a3e7157a11bd1fc3f6784ac6303534dce39bae2e620cedd3bf83f7e071928c81
status: passed
status: failed
tests:
bioimageio:
- bioimageio_spec_version: 0.4.9post4
Expand All @@ -27,37 +27,48 @@ tests:
''in-silico-labeling'']}]'}
- bioimageio_core_version: 0.5.9
bioimageio_spec_version: 0.4.9post4
error: null
error: 'Failed to download https://zenodo.org/api/files/3759664b-38bf-4ba8-b61d-b017dcf420d1/resultImage.tif
(403 Client Error: FORBIDDEN for url: https://zenodo.org/api/files/3759664b-38bf-4ba8-b61d-b017dcf420d1/resultImage.tif)'
name: load resource description
nested_errors: null
status: passed
traceback: null
warnings: {}
- bioimageio_core_version: 0.5.9
bioimageio_spec_version: 0.4.9post4
error: null
name: All URLs and paths available
nested_errors: null
status: passed
traceback: null
status: failed
traceback: [" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\",
line 202, in _test_load_resource\n rdf, weights_priority_order=None if
weight_format is None else [weight_format]\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/core/resource_io/io_.py\",
line 57, in load_resource_description\n rd: ResourceDescription = resolve_raw_node(raw_rd=raw_rd,
nodes_module=nodes)\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/core/resource_io/utils.py\",
line 121, in resolve_raw_node\n rd = UriNodeTransformer(root_path=raw_rd.root_path,
uri_only_if_in_package=uri_only_if_in_package).transform(raw_rd)\n", " File
\"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 56, in transform\n return transformer(node, **kwargs) # noqa\n",
" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 161, in generic_transformer\n node, **{n: self.transform(value, name=n,
parent=node) for n, value in iter_fields(node)}\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 161, in <dictcomp>\n node, **{n: self.transform(value, name=n, parent=node)
for n, value in iter_fields(node)}\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 56, in transform\n return transformer(node, **kwargs) # noqa\n",
" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 161, in generic_transformer\n node, **{n: self.transform(value, name=n,
parent=node) for n, value in iter_fields(node)}\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 161, in <dictcomp>\n node, **{n: self.transform(value, name=n, parent=node)
for n, value in iter_fields(node)}\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 56, in transform\n return transformer(node, **kwargs) # noqa\n",
" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 62, in transform_list\n return [self.transform(subnode, **kwargs)
for subnode in node]\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 62, in <listcomp>\n return [self.transform(subnode, **kwargs) for
subnode in node]\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 56, in transform\n return transformer(node, **kwargs) # noqa\n",
" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/node_transformer.py\",
line 339, in transform_URI\n local_path = _resolve_source(node, root_path=self.root)\n",
" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/functools.py\",
line 840, in wrapper\n return dispatch(args[0].__class__)(*args, **kw)\n",
" File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/_resolve_source.py\",
line 235, in _resolve_source_uri_node\n local_path = _download_url(path_or_remote_uri,
output, pbar=pbar)\n", " File \"/home/runner/micromamba/envs/5877226/lib/python3.7/site-packages/bioimageio/spec/shared/_resolve_source.py\",
line 485, in _download_url\n raise RuntimeError(f\"Failed to download {uri}
({e})\") from e\n"]
warnings: {}
- bioimageio_core_version: 0.5.9
bioimageio_spec_version: 0.4.9post4
error: null
name: Test documentation completeness.
status: passed
traceback: null
warnings: {documentation: No '# Validation' (sub)section found.}
- bioimageio_core_version: 0.5.9
bioimageio_spec_version: 0.4.9post4
error: null
name: reproduce test outputs from test inputs (bioimageio.core 0.5.9)
status: passed
traceback: null
warnings:
non-validation-warnings: ['Device management is not implemented for keras yet,
cannot unload model', Computed dataset percentiles naively by averaging
percentiles of samples.]
deepimagej:
- {bioimageio_spec_version: 0.4.8post1, name: Reproduce test outputs with DeepImageJ
headless, status: passed}
Expand Down
6 changes: 3 additions & 3 deletions rdfs/10.5281/zenodo.5817052/5850574/test_summary.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -63,9 +63,9 @@ tests:
status: passed
traceback: null
warnings:
non-validation-warnings: [Computed dataset percentiles naively by averaging
percentiles of samples., 'Device management is not implemented for keras
yet, cannot unload model']
non-validation-warnings: ['Device management is not implemented for keras yet,
cannot unload model', Computed dataset percentiles naively by averaging
percentiles of samples.]
deepimagej:
- {bioimageio_spec_version: 0.4.8post1, error: Sample image tiffs have not been
generated from numpy tests files, name: Initial compatibility checks with DeepImageJ,
Expand Down

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