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better placeholder mail
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AdrienLeGuillou committed Nov 7, 2023
1 parent f80882d commit 3b65c12
Showing 1 changed file with 16 additions and 16 deletions.
32 changes: 16 additions & 16 deletions vignettes/swfcalib.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -31,9 +31,9 @@ netstats <- readRDS("data/input/netstats.rds")
est <- readRDS("data/input/netest.rds")

param <- param.net(
data.frame.params = read.csv("data/input/params.csv"),
netstats = netstats,
epistats = epistats
data.frame.params = read.csv("data/input/params.csv"),
netstats = netstats,
epistats = epistats
)

init <- init_msm()
Expand Down Expand Up @@ -262,9 +262,9 @@ model <- function(proposal) {
est <- readRDS("data/input/netest.rds")

param <- param.net(
data.frame.params = read.csv("data/input/params.csv"),
netstats = netstats,
epistats = epistats
data.frame.params = read.csv("data/input/params.csv"),
netstats = netstats,
epistats = epistats
)

init <- init_msm()
Expand Down Expand Up @@ -349,12 +349,12 @@ config = list(
n_sims = n_sims,
max_iteration = 100,
default_proposal = dplyr::tibble(
hiv.test.rate_1 = 0.004123238,
hiv.test.rate_2 = 0.003771226,
hiv.test.rate_3 = 0.005956663,
tx.init.rate_1 = 0.2981623,
tx.init.rate_2 = 0.3680919,
tx.init.rate_3 = 0.358254,
hiv.test.rate_1 = 0.004123238,
hiv.test.rate_2 = 0.003771226,
hiv.test.rate_3 = 0.005956663,
tx.init.rate_1 = 0.2981623,
tx.init.rate_2 = 0.3680919,
tx.init.rate_3 = 0.358254,
hiv.trans.scale_1 = 2.470962,
hiv.trans.scale_2 = 0.4247816,
hiv.trans.scale_3 = 0.3342994
Expand Down Expand Up @@ -592,9 +592,9 @@ model <- function(proposal) {
est <- readRDS("data/input/netest.rds")

param <- param.net(
data.frame.params = read.csv("data/input/params.csv"),
netstats = netstats,
epistats = epistats
data.frame.params = read.csv("data/input/params.csv"),
netstats = netstats,
epistats = epistats
)

init <- init_msm()
Expand Down Expand Up @@ -719,7 +719,7 @@ calib_object <- list(
hpc_configs <- EpiModelHPC::swf_configs_rsph(
partition = "epimodel",
r_version = "4.3",
mail_user = "user@emory.edu"
mail_user = "<your_user>@emory.edu"
)

wf <- create_workflow(
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