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14 Open 40 Closed
14 Open 40 Closed
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Issues list

take the deploid.utils R package as upstream dependency, and use vcf files from deploid-vcf
#77 opened Oct 20, 2024 by shajoezhu
reconfig test coverage
#76 opened Oct 20, 2024 by shajoezhu
spell check
#70 opened Oct 13, 2024 by shajoezhu
Build DEploid best interface
#67 opened Apr 17, 2020 by shajoezhu
Build DEploid lasso interface for DEploid r
#66 opened Apr 17, 2020 by shajoezhu
check and test for DEpoid-r DEploid-IBD
#52 opened May 18, 2018 by shajoezhu
export haplotypes into a file
#45 opened Aug 2, 2017 by shajoezhu
enable vcfout option for DEploid-r
#44 opened Aug 2, 2017 by shajoezhu
give options to generate output files, this is an issue in R version, as it generate output to files. let user to choose, add a flag enhancement
#41 opened Jul 20, 2017 by shajoezhu
@shajoezhu
more unittest, many of the DEploid flags are not tested in the r code
#24 opened Oct 30, 2016 by shajoezhu
extractCoverageFromVcf fixed version
#22 opened Oct 23, 2016 by shajoezhu
give example to haplotypePainter
#13 opened Oct 9, 2016 by shajoezhu
Export Haplotypes, break it into chromosomes, then use position index as the column names
#12 opened Oct 9, 2016 by shajoezhu
chrom painting deconvoluted haplotypes from a set of haplotypes
#10 opened Oct 4, 2016 by shajoezhu
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