After clustering CDhit produces a .clstr file detailing which sequences went into which clusters. However, it is not in a machine friendly format. This script converts it to csv while preserving sequence length, and clustering identity.
Can be called as a command line tool. Takes 2 arguments, the
cd-hit .clstr file and the output path.
code/analysis/clstr_to_csv.py data/raw/eg.clstr data/processed/eg.csv