This tool is essentially glue between the SNVPhyl workflow and tbvcfreport. It
reads the variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF
files, using the COMBAT-TB eXplorer database for annotation. In the process
it computes the effect of variants on genes and proteins, thus the
including snptools.vcf module might be more broadly useful.
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Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation
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COMBAT-TB/vcf_from_snvphyl
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Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation
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