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Fixed bugs + added option for journals #1

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Fixed bugs + added option for journals #1

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14 changes: 10 additions & 4 deletions authors.py
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Original file line number Diff line number Diff line change
Expand Up @@ -10,10 +10,12 @@ def main():
parser = argparse.ArgumentParser()
parser.add_argument('auth_tsv')
parser.add_argument('affil_tsv')
parser.add_argument('--journal', type=str, default='apj',
help='Journal format. Currenly supported are apj and nature')
parser.add_argument('--discard', type=int, default=3,
help='Number of lines to discard from the top of the authors spreadsheet, default %(default)')
help='Number of lines to discard from the top of the authors spreadsheet')
parser.add_argument('--discard-affil', type=int, default=1,
help='Number of lines to discard from the top of the affiliations spreadsheet, default %(default)')
help='Number of lines to discard from the top of the affiliations spreadsheet')

# Here we assume the spreadsheet has columns:
#
Expand Down Expand Up @@ -107,7 +109,7 @@ def main():
authors = [authors[i] for i in I]

# ApJ format
if True:
if opt.journal == 'apj':
for auth,orcid,affil in authors:
orctxt = ''
if len(orcid):
Expand All @@ -117,7 +119,7 @@ def main():
print(' \\affiliation{%s}' % affilmap.get(aff, aff))

# Nature format
if False:
elif opt.journal == 'nature':
txt = []
uaffils = []
txt.append('\\author{')
Expand Down Expand Up @@ -147,6 +149,10 @@ def main():
txt.append('\\end{affiliations}')
txt.append('}')
print('\n'.join(txt))

# Journal not recognized
else:
raise NotImplemented("Journal name not found")

acks = list(set(acks))
acks.sort()
Expand Down