Merge pull request #86 from BodenmillerGroup/nilseling-patch-1 #307
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| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| schedule: | |
| - cron: '0 8 1 * *' | |
| name: build | |
| jobs: | |
| docker-build-push: | |
| name: Build and push Docker image to GitHub Container registry | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: write | |
| contents: read | |
| steps: | |
| - name: Checkout the repository | |
| uses: actions/checkout@v3 | |
| - name: set NOW | |
| id: now | |
| run: | | |
| echo "::set-output name=NOW::$(date +'%Y-%m-%d')" | |
| - name: Login to GitHub Container registry | |
| uses: docker/login-action@v1 | |
| env: | |
| GITHUB_USER: ${{ github.actor }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| registry: ghcr.io | |
| username: $GITHUB_USER | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Check Dockerfile | |
| uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| filters: | | |
| docker: | |
| - 'Dockerfile' | |
| - name: Build and Push Docker Image | |
| if: steps.filter.outputs.docker == 'true' || github.event_name == 'schedule' | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: ./Dockerfile | |
| push: true | |
| tags: | | |
| ghcr.io/bodenmillergroup/imcdataanalysis:${{ steps.now.outputs.NOW }} | |
| ghcr.io/bodenmillergroup/imcdataanalysis:latest | |
| bookdown: | |
| runs-on: ubuntu-latest | |
| if: ${{ always() }} | |
| needs: docker-build-push | |
| container: ghcr.io/bodenmillergroup/imcdataanalysis:latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Render Book | |
| run: Rscript -e 'bookdown::render_book("index.Rmd", new_session = TRUE)' | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: docs | |
| path: docs/ | |
| checkout-and-deploy: | |
| runs-on: ubuntu-latest | |
| needs: bookdown | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - name: Download artifact | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: docs # optional | |
| path: docs # optional | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/ | |
| force_orphan: true | |