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Adding Databases object #339

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Adding Databases object #339

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Commits on Sep 18, 2023

  1. Added DatabaseSources to forge.

    @crisely09
    crisely09 committed Sep 18, 2023
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  2. Improved DatabaseSource class. Made possible to load mappings from lo… 

    …cal directory.
    @crisely09
    crisely09 committed Sep 18, 2023
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  3. Added option to retrieve mappings from bd_sources also from the forge.

    @crisely09
    crisely09 committed Sep 18, 2023
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  4. Added option to display types of mappings, a model and a store to eac… 

    …h DatabaseSource.
    @crisely09
    crisely09 committed Sep 18, 2023
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  5. Updated notebook

    @crisely09
    crisely09 committed Sep 18, 2023
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  6. Did a little clean-up of the notebook

    @crisely09
    crisely09 committed Sep 18, 2023
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  7. Change SPARQLStore to Specilized UniProtStore. Added Service and spaq… 

    …l query. Ongoing work.
    @crisely09
    crisely09 committed Sep 18, 2023
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  8. Added SPARQLWrapper to dependency list.

    @crisely09
    crisely09 committed Sep 18, 2023
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  9. Recreated the SPARQLStore, and added the specialized UniProtStore. St… 

    …ill missing to define the search method.
    @crisely09
    crisely09 committed Sep 18, 2023
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  10. Modified the search method of the sparql store. Resources are retriev… 

    …ed. Missing mappings.
    @crisely09
    crisely09 committed Sep 18, 2023
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  11. Updated notebook with search example.

    @crisely09
    crisely09 committed Sep 18, 2023
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  12. Added a draft of UniProt mappings.

    @crisely09
    crisely09 committed Sep 18, 2023
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  13. Make Databases be new archetype. Updated most methods, missing search… 

    …, sparql, and tests.
    @crisely09
    crisely09 committed Sep 18, 2023
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  14. Adding the missing file.

    @crisely09
    crisely09 committed Sep 18, 2023
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  15. Sorted mapping functions. Missing tests.

    @crisely09
    crisely09 committed Sep 18, 2023
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  16. Improved Protein mappings.

    @crisely09
    crisely09 committed Sep 18, 2023
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  17. Implemented mappings methods in RdfModel and update Database classes … 

    …accordingly.
    @crisely09
    crisely09 committed Sep 18, 2023
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  18. Rebased and added unit tests for SPARQLStore and StoreDatabase.

    @crisely09
    crisely09 committed Sep 18, 2023
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  19. Added WebServiceDatabase. Missing tests and improved download methods.

    @crisely09
    crisely09 committed Sep 18, 2023
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  20. Adding missing file.

    @crisely09
    crisely09 committed Sep 18, 2023
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  21. Some changes.

    @crisely09
    crisely09 committed Sep 18, 2023
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  22. Added DemoDB folder.

    @crisely09
    crisely09 committed Sep 18, 2023
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  23. Make types in db_sources optional

    @crisely09
    crisely09 committed Sep 18, 2023
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  24. Some changes.

    @crisely09
    crisely09 committed Sep 18, 2023
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  25. Added initial unit tests for WebService Database.

    @crisely09
    crisely09 committed Sep 18, 2023
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  26. Update tests for webservice databases.

    @crisely09
    crisely09 committed Sep 18, 2023
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  27. Resolve conflicts with old methods

    @crisely09
    crisely09 committed Sep 18, 2023
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Commits on Oct 15, 2023

  1. Merge branch 'master' into dev-resources

    @MFSY
    MFSY authored Oct 15, 2023
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Commits on Oct 19, 2023

  1. Merge branch 'master' into dev-resources

    @crisely09
    crisely09 authored Oct 19, 2023
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  2. Add mapper and mapping methods to SPARQL store

    @crisely09
    crisely09 committed Oct 19, 2023
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Commits on Oct 26, 2023

  1. Merge branch 'master' into dev-resources

    @crisely09
    crisely09 authored Oct 26, 2023
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  2. Small mixes

    @crisely09
    crisely09 committed Oct 26, 2023
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  3. Add self to tests in classes

    @crisely09
    crisely09 committed Oct 26, 2023
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Commits on Oct 27, 2023

  1. Merge branch 'master' into dev-resources

    @crisely09
    crisely09 authored Oct 27, 2023
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