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BiSBi @ Centre of Biological Engineering

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  1. DeepMol DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 114 11

  2. MEWpy MEWpy Public

    Metabolic Engineering Workbench

    Python 37 12

  3. propythia propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    Jupyter Notebook 28 10

  4. troppo troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 23 5

  5. cobamp cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    Jupyter Notebook 14 2

  6. ReactEA ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 8 1

Repositories

Showing 10 of 29 repositories
  • DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    BioSystemsUM/DeepMol’s past year of commit activity
    Python 114 BSD-2-Clause 11 16 0 Updated Nov 20, 2024
  • deepmol_case_studies Public

    Case Studies from the DeepMol Publication

    BioSystemsUM/deepmol_case_studies’s past year of commit activity
    Jupyter Notebook 2 BSD-2-Clause 0 0 0 Updated Nov 20, 2024
  • BioSystemsUM/diel_models’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 18, 2024
  • troppo Public

    Reconstruction algorithms for Python

    BioSystemsUM/troppo’s past year of commit activity
    Jupyter Notebook 23 GPL-3.0 5 6 (1 issue needs help) 1 Updated Oct 23, 2024
  • BioSystemsUM/BioCatalyzer-CaseStudy’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 16, 2024
  • s2m2 Public

    Materials for the Summer School in Metabolic Modeling - 2024 edition

    BioSystemsUM/s2m2’s past year of commit activity
    Jupyter Notebook 5 GPL-2.0 2 0 0 Updated Jul 4, 2024
  • BioCatalyzer Public

    BioCatalyzer: a rule-based tool to predict compound metabolism

    BioSystemsUM/BioCatalyzer’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jun 28, 2024
  • MEWpy Public

    Metabolic Engineering Workbench

    BioSystemsUM/MEWpy’s past year of commit activity
    Python 37 GPL-3.0 12 4 0 Updated Jun 9, 2024
  • biomeneco Public

    A project to accelerate gap-filling of metabolic models

    BioSystemsUM/biomeneco’s past year of commit activity
    1 MIT 0 0 1 Updated Dec 5, 2023
  • propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    BioSystemsUM/propythia’s past year of commit activity
    Jupyter Notebook 28 GPL-3.0 10 0 2 Updated Sep 4, 2023

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