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30 Open 503 Closed
30 Open 503 Closed
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Issues list

Building Enrichment Map error
#554 opened Nov 11, 2024 by TarekGharsalli
8
Building enrichmentmap error message : could not parse line 2 of the enrichment file!
#553 opened Oct 9, 2024 by freakytam
3
concentric circle visualization - ability to visualize multiple EM metrics in the same node enhancement
#552 opened Oct 8, 2024 by risserlin
Merge Tool to visualise communalities between two networks
#551 opened Sep 17, 2024 by LilliThePink
2
mastermap with commands from docker does not work bug
#547 opened Jul 4, 2024 by risserlin
issue installing new version of EM app if you installed through EM collection
#545 opened May 21, 2024 by risserlin
1
ability to layout network by dataset enhancement
#529 opened Nov 22, 2023 by risserlin
Upgrade Java and Guice
#525 opened Jul 25, 2023 by mikekucera
Provide a sorted list of pathways
#523 opened Jun 28, 2023 by mikekucera 3.4.0
"EnrichmentMap - show in pathway commons Functionality" - add input panel so user can control what is used in painter enhancement
#481 opened Feb 17, 2022 by risserlin
"EnrichmentMap - show in pathway commons Functionality" - overlap metrics not informative enhancement
#480 opened Feb 17, 2022 by risserlin
"EnrichmentMap - show in pathway commons Functionality" - no expression data needs an error message bug
#479 opened Feb 17, 2022 by risserlin
EnrichmentMap - show in pathway commons Functionality - Better documentation needed enhancement
#478 opened Feb 17, 2022 by risserlin
1
Add notebook demonstrating how to use fgsea with EM enhancement
#412 opened May 11, 2020 by risserlin
6
Multi dataset documentation docs
#410 opened May 4, 2020 by risserlin
@mikekucera
Change node border color/width in the default one dataset analysis bug
#344 opened Jul 20, 2018 by risserlin
@mikekucera
change the way expression file classes are coloured. enhancement
#247 opened Jul 11, 2017 by risserlin
Set different threshold for different datasets enhancement
#245 opened Jul 7, 2017 by risserlin 3.3.5
Multi dataset analysis - highlight significant values enhancement
#217 opened Jun 16, 2017 by risserlin
Post analysis node size is disproportionate bug
#187 opened May 9, 2017 by risserlin 3.1_release
@mikekucera
3
creating EM from cyrest command using edb and rank file creates EM with the wrong ranks bug
#178 opened Mar 7, 2017 by risserlin 3.3.4
@mikekucera
Update David support - visual style bug
#159 opened Jul 18, 2016 by risserlin 3.3.4
@mikekucera
Incorporate query size to term size values from g:Profiler into EM generic output so it can be used to node size mapping enhancement
#157 opened Jun 1, 2016 by risserlin Future features
Add functionality to EM/GSEA integration - leading edge tool enhancement
#151 opened Mar 18, 2016 by risserlin Future features
"Dark matter" - explore genes not found in any of the genesets in the context of the enrichment map enhancement
#142 opened Jan 8, 2016 by risserlin Future features
1
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