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Merge changes from main into hotfix #360

Merged
merged 19 commits into from
Oct 29, 2024
Merged

Merge changes from main into hotfix #360

merged 19 commits into from
Oct 29, 2024

Commits on Oct 1, 2024

  1. Merge changes from main into hotfix (#195) (#346) 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sara Monzón <[email protected]>
Co-authored-by: Pablo Mata <[email protected]>
Co-authored-by: Víctor López <[email protected]>
    @github-actions @saramonzon
    @Shettland @victor5lm
    4 people authored Oct 1, 2024
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Commits on Oct 15, 2024

  1. Included actions to publish release to pypi

    @Shettland
    Shettland committed Oct 15, 2024
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  2. Updated CHANGELOG

    @Shettland
    Shettland committed Oct 15, 2024
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  3. Updated new pip instructions

    @Shettland
    Shettland committed Oct 15, 2024
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Commits on Oct 29, 2024

  1. Updated the fix-permissions module in __main__.py

    @victor5lm
    victor5lm committed Oct 29, 2024
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  2. Updated taxprofiler.config

    @victor5lm
    victor5lm committed Oct 29, 2024
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  3. Updated sftp_user.json

    @victor5lm
    victor5lm committed Oct 29, 2024
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  4. Fixed viralrecon's lablog and remove_columns script

    @victor5lm
    victor5lm committed Oct 29, 2024
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  5. Updated mtbseq templates

    @victor5lm
    victor5lm committed Oct 29, 2024
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  6. Updated bioinfo_doc.py to handle the Unable to send e-mail error message

    @victor5lm
    victor5lm committed Oct 29, 2024
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  7. Updated new_service.py to check FASTQ integrity

    @victor5lm
    victor5lm committed Oct 29, 2024
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  8. Updated CHANGELOG.md, setup.py and __main__.py

    @victor5lm
    victor5lm committed Oct 29, 2024
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  9. Fixed some linting mistakes in new_service.py

    @victor5lm
    victor5lm committed Oct 29, 2024
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  10. Ran black on new_service.py

    @victor5lm
    victor5lm committed Oct 29, 2024
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  11. Removed an extra comma from sftp_user.json

    @victor5lm
    victor5lm committed Oct 29, 2024
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  12. Removed conda env line from viralrecon's results lablog

    @victor5lm
    victor5lm committed Oct 29, 2024
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  13. Substituted /srv/fastq_repo by its variable name

    @victor5lm
    victor5lm committed Oct 29, 2024
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  14. Ran black on new_service.py

    @victor5lm
    victor5lm committed Oct 29, 2024
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  15. Merge pull request #358 from BU-ISCIII/develop 

    Develop merge for 2.2.2 release
    @victor5lm
    victor5lm authored Oct 29, 2024
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