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Quick update for MPI collective block size and minor SYCL document update #1014

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Quick update for MPI collective block size and minor SYCL document update #1014

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Commits on Jan 20, 2023

  1. added Q0 to tomogram set, and have it imported from the start

    @scheres
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  2. ignore empty images in getDiff2 and storeWSUMs in legacy code for sub… 

    …tomo stack2d
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Commits on Jan 24, 2023

  1. Fix rich import error

    @EuanPyle
    EuanPyle committed Jan 24, 2023
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  2. Remove superfluous import

    @EuanPyle
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  3. Merge pull request #89 from EuanPyle/fix_rich 

    Fix rich module import in denoising
    @EuanPyle
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Commits on Feb 14, 2023

  1. EER 2K rendering (not-tested)

    @biochem-fan
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Commits on Feb 20, 2023

  1. Tomo_Model: Fixed issue where missing images were kept in star file a… 

    …s NA (#90)

* Fixed issue where not found images were kept in star file

* Added warning

* Update src/tomography_python_programs/_utils/mdoc.py

---------

Co-authored-by: alisterburt <[email protected]>
    @EuanPyle @alisterburt
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Commits on Feb 28, 2023

  1. add simple picker for isolated particles (#91)

    @alisterburt
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Commits on Mar 8, 2023

  1. prevent multi gpu use in cryocare

    @EuanPyle
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  2. clarify that GPU ID must be provided

    @EuanPyle
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  3. Merge pull request #92 from EuanPyle/remove_cryocare_parallel_gpus_two 

    Remove option in cryocare for parallel gpus
    @EuanPyle
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  4. Add a 'sphere picker' (#93) 

    * add dummy sphere picker

* working saving/reloading of annotations and added save dialog to avoid data loss
    @alisterburt
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Commits on Mar 9, 2023

  1. Initiali patch set of MPI collectives

    @do-jason
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  2. Make split size of MPI data multiple of 8 bytes

    @do-jason
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  3. Msum just need memory allocation

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  4. fix name error

    @alisterburt
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  5. Merge branch 'tomo_model' of https://github.com/3dem/relion-devel int… 

    …o tomo_model
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Commits on Mar 10, 2023

  1. added picking tomograms jobtype on gui

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Commits on Mar 23, 2023

  1. Integrate picking python scripts with pipeline control

    @EuanPyle
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  2. Merge pull request #96 from EuanPyle/fix_picking_gui_bugs 

    Integrate picking python scripts with pipeline control
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Commits on Mar 24, 2023

  1. Picking particles needs napari-threedee so added to dependencies (#95)

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Commits on Apr 3, 2023

  1. USE_MPI_COLLECTIVE enabled by default for CPU acceleration

    @do-jason
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  2. Merge pull request #94 from do-jason/mpi_opt 

    MPI collective addition for some routines
    @biochem-fan
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Commits on Apr 12, 2023

  1. make optics star file for particles in tomo_subtomo when coming in co… 

    …ld from picking
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  2. Merge branch 'tomo_model' of https://github.com/3dem/relion-devel int… 

    …o tomo_model
    @scheres
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  3. resolving merge conflicts

    @scheres
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  4. set version to 5.0-alpha-1

    @scheres
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  5. resolved tricky merge conflict in ml_optimiser

    @scheres
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  6. assume zero offsets if offsets are not present in the input star file

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Commits on Apr 14, 2023

  1. FAO Alister: Make pick particle read denoised tomograms if they exist (… 

    …#97)

* Trying to get pick particle to read denoised or half tomograms, currently not functional

* Remove reading half tomograms

* Fix typo

* AB fixes
    @EuanPyle
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Commits on Apr 18, 2023

  1. fix merge snafu (#98)

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Commits on Apr 19, 2023

  1. fixed bug in mpi-version of tomo_subtomo

    @scheres
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  2. Merge branch 'tomo_model' into subtomo_stack2d

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  3. not sure why merge deleted 3 lines around l118 in ml_optimiser_mpi.cp… 

    …p after merge, but put them back in...
    @scheres
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  4. removed spurious imag_name printing

    @scheres
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  5. tidying up MPI code for reconstruct_tomogram, also raise errors if n… 

    …ecessary pixel sizes are not in tomogram_set star files
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  6. removed sanity checks on rlnTomoFrameCount, as recommended by Alister

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  7. now repaired bug in mpi of reconstruct_tomogram

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Commits on Apr 20, 2023

  1. pass tomoset to constructor of particleset, in case there is no optic… 

    …s group table yet
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  2. tomo_reconstruct_particle now also works when there are no rlnRandomS… 

    …eubset labels in the particle star file
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Commits on Apr 25, 2023

  1. implemented anisotropic offset searches through sigma2_offset_xyz wit… 

    …h priors centered on the offset from the previous iteration
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  2. keep the priors fixed at the input offsets, when using user-specified… 

    … offset searches in xyz
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  3. only remove offset priors from particles.star if they werent there to… 

    … begin with
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Commits on May 2, 2023

  1. removed writing of optimisation set at Alisters request

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Commits on May 4, 2023

  1. remove compulsory prsence of pre-exposure in global table, still rema… 

    …ins in individual tomogram star files
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Commits on May 5, 2023

  1. integrate latest versions of pickers

    @alisterburt
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  2. put passive viewers in one program

    @alisterburt
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  3. fix imports in GUI components

    @alisterburt
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  4. adjust output directories - annotations now go in 'annotations' subdi… 

    …rectory of job dir
    @alisterburt
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  5. add program for combining particle annotations

    @alisterburt
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  6. add RELION program for deriving positions and eulers from spheres usi… 

    …ng morphosamplers

This program does not yet properly incorporate necessary information for proper use of angular priors in combination with '--apply_orientations' during particle extraction
    @alisterburt
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  7. make picking programs compatible with the relion pipeliner

    @alisterburt
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  8. add program for deriving poses from filaments using morphosamplers 

    This is not yet compatible with helical priors and '--apply_orientations' during subtomogram extraction
    @alisterburt
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  9. fix minor bugs in sampling sphere program

    @alisterburt
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  10. initial test of support for helical priors 

    to use helical priors properly, particles must be extracted with --apply_orientations during stack2d extraction...
    @alisterburt
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  11. update deps

    @alisterburt
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  12. invert rotated basis for euler conversion

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Commits on May 9, 2023

  1. EER: supported 2K EER with the 7+2 bits coding 

    WIP: loadEERGain() still assumes a 4K detector, super-resolution not
tested yet.
    @biochem-fan
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  2. Merge branch 'ver4.0' into EER2K

    @biochem-fan
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  3. EER: updated texts for --eer_upsampling

    @biochem-fan
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  4. removing error for filament picker

    @scheres
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  5. added warning not to use --apply_orientations anymore

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  6. add filament priors with rlnTomoSubtomogramRot/Tilt/Psi set to partic… 

    …les pre-rotated -90 degrees around the Y axis and account for that 90 degree rotation in rlnAngleRot/Tilt/Psi and rlnAngleTilt/PsiPrior.
    @alisterburt
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  7. Merge remote-tracking branch 'origin/subtomo_stack2d' into subtomo_st… 

    …ack2d
    @alisterburt
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  8. sort on pre-exposure instead of tilt_movie_index

    @scheres
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  9. Merge branch 'subtomo_stack2d' of https://github.com/3dem/relion-devel … 

    …into subtomo_stack2d
    @scheres
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  10. make sphere pose program give pre-rotated particles with SubtomogramR… 

    …ot/Tilt/Psi for oriented particles rotated 90 degrees around Y
    @alisterburt
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  11. Merge remote-tracking branch 'origin/subtomo_stack2d' into subtomo_st… 

    …ack2d
    @alisterburt
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  12. mdocfile no longer produces snake-case labels, fix bug in exposure do… 

    …se calculation
    @alisterburt
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  13. add check for pre-exposure dose being all 0 on import

    @alisterburt
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  14. put pre-expsure labels back into ctffind runner star file

    @scheres
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  15. Merge branch 'subtomo_stack2d' of https://github.com/3dem/relion-devel … 

    …into subtomo_stack2d
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  16. output message for is_tomo corrected

    @scheres
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  17. remove rlnTomoTiltMovieIndex as no longer needed

    @alisterburt
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Commits on May 10, 2023

  1. EER 2K: Use H/V subpixel fields

    @biochem-fan
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  2. EER: supported 2K detectors in loadEERGain(). This function is no longer 

    static.
    @biochem-fan
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  3. address datetime deprecation warning

    @alisterburt
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  4. only write success/failure if --pipeline_control is set

    @alisterburt
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  5. make helicaltubeID start at 1

    @alisterburt
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Commits on May 11, 2023

  1. EER: fix 2K super-resolution

    @biochem-fan
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Commits on May 17, 2023

  1. update import gui to not be movie specific

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Commits on May 18, 2023

  1. extract subtomograms tilted 90 degrees around Y relative to a referen… 

    …ce with a symmetry axis along Z
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Commits on May 19, 2023

  1. go ahead with 2D shifts in stacks

    @scheres
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  2. finetuned verbosity

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  3. added particle spacing and call to get_poses for picktomo jobtype

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  4. Merge branch 'subtomo_stack2d' of https://github.com/3dem/relion-devel … 

    …into subtomo_stack2d
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Commits on May 25, 2023

  1. dont use spacing with particles

    @scheres
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  2. Add particle visualisation program (#99) 

    * add particle visualisation program - includes support for subtomogram orientation

* set defaults for vectors in larger tomograms

* rescale shifts by image pixel size

* place widget in container

* add support for loading tomograms alongside particles
    @alisterburt
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  3. minor visualisation improvements to particle viewer (#100) 

    * add particle visualisation program - includes support for subtomogram orientation

* set defaults for vectors in larger tomograms

* rescale shifts by image pixel size

* place widget in container

* add support for loading tomograms alongside particles

* minor visualisation improvements

* lint

* fix origin heading check

* lint

* lint
    @alisterburt
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Commits on Jul 3, 2023

  1. Merge branch 'subtomo_stack2d' of https://github.com/3dem/relion-devel … 

    …into subtomo_stack2d
    @scheres
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  2. Merge branch 'EER2K' of https://github.com/3dem/relion-devel

    @scheres
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  3. Merge branch 'master' into tomo_model

    @scheres
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  4. after merging tomo_model (from master and EER2K) into subtomo_stack2d

    @scheres
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Commits on Jul 12, 2023

  1. Removed unsued flag.

    @dkimanius
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Commits on Jul 13, 2023

  1. added float16 option to stack_create

    @scheres
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  2. changed version to 5.0-alpha

    @scheres
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  3. Merge branch 'suyash/ver4.0-hip' of https://github.com/suyashtn/relion … 

    …into relion-5.0-alpha
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  4. repaired bug in stack_create, introduced when introducing float16 option

    @scheres
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Commits on Jul 18, 2023

  1. added dynamight and modelangelo jobtypes and added blush option ot re… 

    …lion_refine 3d GUIs
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Commits on Jul 19, 2023

  1. Fixed broken config due to HIP and removed classranker dependency

    @dkimanius
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  2. Added conda environment.yml for python dependencies

    @dkimanius
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  3. Classranker moved to the new python environment access approach.

    @dkimanius
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Commits on Jul 20, 2023

  1. added a jiffy to suggest T values for focussed classification or ref… 

    …inement
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  2. better output suggest_tvalues

    @scheres
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  3. Merge branch 'relion-5.0-alpha' of https://github.com/3dem/relion-devel… 

    … into relion-5.0-alpha
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  4. Class ranker now works with the new python environment.

    @dkimanius
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Commits on Jul 25, 2023

  1. Merge branch 'ver4.0'

    @biochem-fan
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  2. Merge branch 'ver4.0' into relion-5.0-alpha

    @biochem-fan
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  3. tweaking in modelangelo gui

    @scheres
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Commits on Jul 31, 2023

  1. Merge branch 'master' into subtomo_stack2d

    @scheres
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  2. Merge branch 'subtomo_stack2d' of https://github.com/3dem/relion-devel … 

    …into subtomo_stack2d
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  3. Merge branch 'master' into subtomo_stack2d

    @scheres
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  4. resolved conflicts and set version to relion-5.0-alpha-2

    @scheres
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  5. now compiles with rocm again, inserted += kernels in HIP, also put ba… 

    …ck in (ctf_premultiplied) block in acc_ml_optimiser_impl.h
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Commits on Aug 1, 2023

  1. added extra lines in HIP code that are needed after merging with subt… 

    …omo_stack2d
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  2. making sure that Hip code also compiles with ALTCPU=on

    @scheres
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Commits on Aug 2, 2023

  1. repaired bug due to merging of amd and subtomo_stack2d branches

    @scheres
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Commits on Aug 3, 2023

  1. Quick-fix for USE_MPI_COLLECTIVE

    @do-jason
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  2. Merge pull request #103 from 3dem/qfix_mpi_collective 

    Quick fix for USE_MPI_COLLECTIVE
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Commits on Aug 4, 2023

  1. Replace -std::numeric_limits<double>::max() 

     with std::numeric_limits<double>::lowest()
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Commits on Aug 18, 2023

  1. Added DynaMight to Python dependencies.

    @dkimanius
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Commits on Aug 22, 2023

  1. Cmake use bash wrappers for all python modules

    @dkimanius
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  2. Added more python wrappers

    @dkimanius
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  3. Blush is now a flag in refine and refine_mpi

    @dkimanius
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Commits on Aug 23, 2023

  1. Automatic conda environment search

    @dkimanius
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  2. Added DynaMight command call

    @dkimanius
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  3. Added a script that automatically finds the right conda environment a… 

    …nd Torch home directory.
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  4. Fixed Blush issue with new line character in Python return string.

    @dkimanius
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  5. README instruction on Conda and Python

    @dkimanius
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Commits on Aug 24, 2023

  1. First SYCL implementation for RELION

    @do-jason
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  2. Fix errorneous CMakeList file copy

    @do-jason
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  3. Temporary change branch name

    @do-jason
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  4. Minor update on SYCL document

    @do-jason
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  5. URL changes for OpenCL and NVIDIA

    @do-jason
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  6. Minor README fix-up

    @dkimanius
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  7. New GUI background

    @dkimanius
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Commits on Aug 25, 2023

  1. Changed constant to float in SYCL kernels

    @do-jason
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Commits on Aug 29, 2023

  1. 2K EER: repair 2K to 4K upsampling

    @biochem-fan
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  2. Merge branch 'EER2K' of github.com:3dem/relion into EER2K

    @biochem-fan
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  3. Merge branch 'EER2K' into relion-5.0-alpha

    @biochem-fan
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  4. Impose lower bound for offset sigma square.

    @dkimanius
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Commits on Aug 30, 2023

  1. added dynamight jobtype

    @scheres
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  2. Merge branch 'master' of github.com:3dem/relion

    @scheres
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  3. merged in master from public relion, after fixing bug with local symm… 

    …etry
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  4. GPU specifications passed to Blush along with additional arguments.

    @dkimanius
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  5. Blush arguments are set via environmental variable RELION_BLUSH_ARGS

    @dkimanius
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Commits on Aug 31, 2023

  1. added topaz python wrapper

    @scheres
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  2. Merge branch 'relion-5.0-alpha' of https://github.com/3dem/relion-devel… 

    … into relion-5.0-alpha
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  3. Print info when running Blush.

    @dkimanius
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  4. Fixed README

    @dkimanius
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  5. Refine flag for skipping spectral trailing in Blush.

    @dkimanius
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Commits on Sep 11, 2023

  1. Add FP64 support check routine for ACC_DOUBLE_PRECISION

    @do-jason
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Commits on Sep 12, 2023

  1. SYCL: updated build and runtime information

    @biochem-fan
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Commits on Sep 13, 2023

  1. Add --gpu 0:1 syntax support 

    --gpu/--sycl is alias for --sycl-levelzero
Removed undocumented debug variables in README_sycl.md file
    @do-jason
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  2. Catchup "relion-5.0-alpha" as of Sep. 1st

    @do-jason
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Commits on Sep 14, 2023

  1. Refined SYCL device information

    @do-jason
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Commits on Sep 15, 2023

  1. Rename the term from CCS to Slice

    @do-jason
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  2. Remove debug BOOST usage

    @do-jason
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  3. Add SYCL_EXT_ONEAPI_MAX_WORK_GROUP_QUERY and minor CMakeLists.txt cha… 

    …nges
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Commits on Sep 18, 2023

  1. Add SYCL_EXT_INTEL_CSLICE feature test macro

    @do-jason
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  2. added python versions of Alisters tomo prgrams

    @scheres
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  3. replaced calls to Alisters tomo programs with their python versions

    @scheres
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Commits on Sep 19, 2023

  1. Add -fsigned-zeros compiler flag and sycl::native math functions, and… 

    … changed some macro names
    @do-jason
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  2. added Alisters code in current directory to enviroment.yml

    @scheres
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  3. changed dose-rate entry on tilt series import

    @scheres
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  4. remove dose-per-frame for motioncorr of tilt series tomo

    @scheres
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  5. relion_convert_to_tiff: improve parallelization with 

    --only_do_unfinished (fix the issue #985)
    @biochem-fan
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  6. Merge branch 'ver4.0' into relion-5.0-alpha

    @biochem-fan
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  7. Merge branch 'public-master' into ver4.0

    @biochem-fan
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  8. Merge branch 'ver4.0' into relion-5.0-alpha

    @biochem-fan
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Commits on Sep 20, 2023

  1. added David Lis Filament selection tools based on dendrogram threshol… 

    …ding to the relion subset selection GUI
    @scheres
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  2. Merge branch 'relion-5.0-alpha' of https://github.com/3dem/relion-devel… 

    … into relion-5.0-alpha
    @scheres
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Commits on Sep 21, 2023

  1. Refactoring of two CMakeLists.txt files

    @do-jason
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  2. fixed some bugs in dynamight GUI

    @scheres
    scheres committed Sep 21, 2023
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  3. tweaking dynamight io

    @scheres
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  4. tweaking dynamight io2

    @scheres
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  5. only add rlnClassNumber in displayer if it is not yet present, as thi… 

    …s may be the case after Davids filamenttools
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Commits on Sep 23, 2023

  1. repair bug ctffind_runner for SPA

    @scheres
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Commits on Sep 25, 2023

  1. DynaMight moved to 3dem repo

    @dkimanius
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  2. Added ModelAngelo to cmake and added weights download attempt during … 

    …cmake configure time.
    @dkimanius
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Commits on Sep 26, 2023

  1. moved dynamight repo to 3dem

    @scheres
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  2. Merge branch 'relion-5.0-alpha' of https://github.com/3dem/relion-devel… 

    … into relion-5.0-alpha
    @scheres
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  3. Fix ModelAngelo install in environment.yml

    @jamaliki
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  4. Fix fetch weights for ModelAngelo

    @jamaliki
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  5. Merge pull request #105 from jamaliki/patch-1 

    Fix ModelAngelo installation and setup with RELION cmake
    @dkimanius
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Commits on Sep 27, 2023

  1. Merge branch 'relion-5.0-alpha' of https://github.com/3dem/relion-devel… 

    … into relion-5.0-alpha
    @scheres
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  2. add bundle name to fetch weight call for modelangelo

    @scheres
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  3. changed default modelabgelo to our python callable version

    @scheres
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Commits on Sep 28, 2023

  1. fixing classranker calls with python_classranker setup

    @scheres
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  2. replaced topaz_exe and modelangelo_exe with relion_python calls

    @scheres
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  3. for now, blush always works in pad 1

    @scheres
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Commits on Oct 3, 2023

  1. repaired bug in renaming alias, as reported by Takanori

    @scheres
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  2. repaired bug in renaming alias, as reported by Takanori

    @scheres @biochem-fan
    scheres authored and biochem-fan committed Oct 3, 2023
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  3. Merge branch 'ver4.0' into relion-5.0-alpha

    @biochem-fan
    biochem-fan committed Oct 3, 2023
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Commits on Oct 4, 2023

  1. repaired picktomo of particles, not passing spacing param

    @scheres
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  2. merged

    @scheres
    scheres committed Oct 4, 2023
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  3. renamed particles metadatatable

    @scheres
    scheres committed Oct 4, 2023
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Commits on Oct 5, 2023

  1. collect data from all spheres

    Rangana Warshamanage committed Oct 5, 2023
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Commits on Oct 10, 2023

  1. Merge pull request #107 from ranganawarshamanage/relion-5.0-alpha 

    collect data from all spheres
    @scheres
    scheres authored Oct 10, 2023
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Commits on Oct 16, 2023

  1. Added the below environment variables 

    - relionSyclUseCuda
- relionSyclUseHip
- relionSyclUseSubSubDevice
- relionSyclUseInOrderQueue
- relionSyclUseAsyncSubmission
- relionSyclUseStream
    @do-jason
    do-jason committed Oct 16, 2023
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  2. repaired bug in changes in angles as reported by Katerina Naydenova

    @scheres
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Commits on Oct 17, 2023

  1. Replace -std::numeric_limits<double>::max() 

     with std::numeric_limits<double>::lowest()
    @do-jason
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  2. Fix errorneous CMakeList file copy

    @do-jason
    do-jason committed Oct 17, 2023
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  3. Minor update on SYCL document

    @do-jason
    do-jason committed Oct 17, 2023
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  4. URL changes for OpenCL and NVIDIA

    @do-jason
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  5. Changed constant to float in SYCL kernels

    @do-jason
    do-jason committed Oct 17, 2023
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  6. Add FP64 support check routine for ACC_DOUBLE_PRECISION

    @do-jason
    do-jason committed Oct 17, 2023
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  7. SYCL: updated build and runtime information

    @biochem-fan @do-jason
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  8. Add --gpu 0:1 syntax support 

    --gpu/--sycl is alias for --sycl-levelzero
Removed undocumented debug variables in README_sycl.md file
    @do-jason
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  9. Catchup "relion-5.0-alpha" as of Sep. 1st

    @do-jason
    do-jason committed Oct 17, 2023
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  10. Refined SYCL device information

    @do-jason
    do-jason committed Oct 17, 2023
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  11. Rename the term from CCS to Slice

    @do-jason
    do-jason committed Oct 17, 2023
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  12. Remove debug BOOST usage

    @do-jason
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  13. Add SYCL_EXT_ONEAPI_MAX_WORK_GROUP_QUERY and minor CMakeLists.txt cha… 

    …nges
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  14. Add SYCL_EXT_INTEL_CSLICE feature test macro

    @do-jason
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  15. Add -fsigned-zeros compiler flag and sycl::native math functions, and… 

    … changed some macro names
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  16. Refactoring of two CMakeLists.txt files

    @do-jason
    do-jason committed Oct 17, 2023
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  17. Added the below environment variables 

    - relionSyclUseCuda
- relionSyclUseHip
- relionSyclUseSubSubDevice
- relionSyclUseInOrderQueue
- relionSyclUseAsyncSubmission
- relionSyclUseStream
    @do-jason
    do-jason committed Oct 17, 2023
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  18. Rebase and prepare for PR

    @do-jason
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  19. Merge branch 'sycl-merge' of https://github.com/3dem/relion-devel int… 

    …o sycl-merge
    @do-jason
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  20. Remained fix after rebase

    @do-jason
    do-jason committed Oct 17, 2023
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  21. Merge pull request #108 from 3dem/sycl-merge 

    SYCL branch merge
    @scheres
    scheres authored Oct 17, 2023
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  22. Fix an error in CMakeList.txt about SYCL-NVIDIA.

    @biochem-fan
    biochem-fan committed Oct 17, 2023
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Commits on Oct 18, 2023

  1. Fix compilation for Intel Classic compiler

    @do-jason
    do-jason committed Oct 18, 2023
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Commits on Oct 20, 2023

  1. Update README.md

    @scheres
    scheres authored Oct 20, 2023
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  2. Update README.md

    @scheres
    scheres authored Oct 20, 2023
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Commits on Oct 24, 2023

  1. Downloading model weights is a Cmake option now.

    @dkimanius
    dkimanius committed Oct 24, 2023
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  2. Throw a warning when model weights download fails.

    @dkimanius
    dkimanius committed Oct 24, 2023
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  3. Don't warn when successful

    @dkimanius
    dkimanius committed Oct 24, 2023
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  4. User can set CUDA and HIP architecture during cmake config

    @dkimanius
    dkimanius committed Oct 24, 2023
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  5. Fixed issue in Cmake option for cuda architecture

    @dkimanius
    dkimanius committed Oct 24, 2023
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  6. Fixed issue in Cmake option for cuda architecture for new cmake version

    @dkimanius
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Commits on Oct 25, 2023

  1. final changes for release-5.0 before going beta

    @scheres
    scheres committed Oct 25, 2023
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  2. changed version to 5.0-beta-0

    @scheres
    scheres committed Oct 25, 2023
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Commits on Oct 26, 2023

  1. Updated README.md for 5.0 beta release.

    @biochem-fan
    biochem-fan committed Oct 26, 2023
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Commits on Oct 27, 2023

  1. Small typo

    @MartinSalinas98
    MartinSalinas98 authored Oct 27, 2023
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  2. added back executables for topaz, dynamight and modelangelo in case t… 

    …here are problems with the conda install
    @scheres
    scheres committed Oct 27, 2023
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  3. Merge branch 'master' of https://github.com/3dem/relion-devel

    @scheres
    scheres committed Oct 27, 2023
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  4. Merge pull request #998 from MartinSalinas98/patch-1 

    Small typo
    @biochem-fan
    biochem-fan authored Oct 27, 2023
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  5. Merge branch 'ver4.0' into ver5.0

    @biochem-fan
    biochem-fan committed Oct 27, 2023
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  6. Update README.md 

    removed duplication of installation instructions on relion-documents/readthedocs to avoid diverging versions.
    @scheres
    scheres authored Oct 27, 2023
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  7. Merge branch 'ver5.0' of github.com:3dem/relion into ver5.0

    @biochem-fan
    biochem-fan committed Oct 27, 2023
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  8. Updated the About dialog.

    @biochem-fan
    biochem-fan committed Oct 27, 2023
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  9. Further remove duplicates from README.md.

    @biochem-fan
    biochem-fan committed Oct 27, 2023
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  10. removed group members to avoid having to maintain ever changing list

    @scheres
    scheres committed Oct 27, 2023
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  11. better passing of topaz executable

    @scheres
    scheres committed Oct 27, 2023
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Commits on Oct 31, 2023

  1. Fixed CPU single precision build reported in GitHub issue #1002 by 

    Walid Abu Al-Afia (@walidabualafia).
    @biochem-fan
    biochem-fan committed Oct 31, 2023
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  2. Merge branch 'ver5.0' of github.com:3dem/relion into ver5.0

    @biochem-fan
    biochem-fan committed Oct 31, 2023
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  3. Remove old specific branch checkout statement

    @do-jason
    do-jason committed Oct 31, 2023
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Commits on Nov 1, 2023

  1. Change MPI block size and minor SYCL document update

    @do-jason
    do-jason committed Nov 1, 2023
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