comebin_env.yaml

name: comebin_env
channels:
  - pytorch
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - atomicwrites=1.4.0
  - bedtools=2.30.0
  - biolib=0.1.6
  - biopython=1.76
  - bwa=0.7.17
  - checkm-genome=1.1.3
  - cudatoolkit=11.1.1
  - fraggenescan=1.31 
  - hmmer=3.1b2
  - matplotlib-base=3.5.1
  - matplotlib-inline=0.1.3
  - numpy=1.19.0
  - pplacer=1.1.alpha19
  - prodigal=2.6.3
  - python=3.7
  - python-dateutil=2.8.2
  - python-fastjsonschema=2.15.3
  - python_abi=3.7
  - pytorch=1.10.2=py3.7_cuda11.1_cudnn8.0.5_0
  - pytorch-mutex=1.0=cuda
  - pip=22.0.4
  - samtools=1.15.1
  - scipy=1.7.3
  - setuptools=59.5.0
  - tensorboard=1.15.0
  - click=8.0.4
  - pip:
    - hnswlib==0.6.2
    - igraph==0.9.9
    - joblib==1.1.0
    - leidenalg==0.8.10
    - networkx==2.6.3
    - numba==0.56.4
    - pandas==1.3.5
    - scanpy==1.9.1
    - scikit-learn==0.22.1
    - seaborn==0.12.1
    - statsmodels==0.13.5
    - pyyaml==6.0