This MONAI bootcamp offers medical imaging researchers training modules and an architectural deep dive.
Most of the notebooks in this repository would benefit considerably from having GPU support enabled. Therefore, it is recommended to run notebooks on Google Colab.
- Getting Started with MONAI
- MONAI Datasets and Caching
- End-To-End Workflow with MONAI
- MONAI Post-Transforms and Inference Methods
Required Packages for Colab Execution
Each notebook has a pip command for installing MONAI and dependencies at the top of it. This is only needed for executing them in Google Colab.
Enabling GPU Support
To use GPU resources through Colab, change the runtime to GPU:
- From the "Runtime" menu select "Change Runtime Type"
- Choose "GPU" from the drop-down menu
- Click "SAVE"
This will reset the notebook and probably ask you if you are a robot (these instructions assume you are not). Running
!nvidia-smi
in a cell will verify this has worked and show you what kind of hardware you have access to.