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histoqc_upload.txt
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histoqc_upload.txt
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filename outdir comments type levels height width mpp_x mpp_y comment Magnification nonwhite template1_MSE_hist template2_MSE_hist template3_MSE_hist template4_MSE_hist michelson_contrast rms_contrast grayscale_brightness chan1_brightness chan2_brightness chan3_brightness chan1_brightness_YUV chan2_brightness_YUV chan3_brightness_YUV pixels_to_use warnings
TCGA-A1-A0SF-01Z-00-DX1.7F252D89-EA78-419F-A969-1B7313D77499.svs ./output_tcga-brca\TCGA-A1-A0SF-01Z-00-DX1.7F252D89-EA78-419F-A969-1B7313D77499.svs Pen marking aperio 4 84727 65276 0.2521 0.2521 "Aperio Image Library v11.1.6 65276x84727 (256x256) JPEG/RGB Q=30;Aperio Image Library v11.1.6 68000x84827 [0,100 65276x84727] (256x256) J2K/YUV16 Q=70|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1336|Filename = 46202|Date = 12/06/11|Time = 10:46:51|Time Zone = GMT-08:00|User = bcf19525-0142-4993-b774-fb5ad5362126|MPP = 0.2521|Left = 24.181761|Top = 23.409918|LineCameraSkew = -0.001615|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000500|DSR ID = ap1336-dsr|ImageID = 46202|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 68000|OriginalHeight = 84827|ICC Profile = ScanScope v1" 40 0.39228 0.00127 0.00044 0.00222 0.00074 1 0.15061 0.63725 207.39248 147.69572 177.0758 0.66233 0.01579 0.13245 2119050
TCGA-A1-A0SM-01Z-00-DX1.AD503DBD-4D93-4476-B467-F091254FDF78.svs ./output_tcga-brca\TCGA-A1-A0SM-01Z-00-DX1.AD503DBD-4D93-4476-B467-F091254FDF78.svs Pen marking aperio 4 80501 100794 0.2521 0.2521 "Aperio Image Library v11.1.6 100794x80501 (256x256) JPEG/RGB Q=30;Aperio Image Library v11.1.6 105000x80601 [0,100 100794x80501] (256x256) J2K/YUV16 Q=70|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1336|Filename = 46215|Date = 12/06/11|Time = 13:58:09|Time Zone = GMT-08:00|User = bcf19525-0142-4993-b774-fb5ad5362126|MPP = 0.2521|Left = 16.913927|Top = 21.150715|LineCameraSkew = -0.001615|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000500|DSR ID = ap1336-dsr|ImageID = 46215|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 105000|OriginalHeight = 80601|ICC Profile = ScanScope v1" 40 0.33279 0.00056 0.00049 0.00153 0.0009 1 0.14985 0.6287 188.57595 150.40149 175.43898 0.64576 0.02078 0.08224 2637490
TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.svs ./output_tcga-brca\TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.svs Pen Marking aperio 4 72891 113274 0.2521 0.2521 "Aperio Image Library v11.1.6 113274x72891 (256x256) JPEG/RGB Q=30;Aperio Image Library v11.1.6 118000x72991 [0,100 113274x72891] (256x256) J2K/YUV16 Q=70|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1336|Filename = 46196|Date = 12/05/11|Time = 18:06:40|Time Zone = GMT-08:00|User = bcf19525-0142-4993-b774-fb5ad5362126|MPP = 0.2521|Left = 22.795021|Top = 22.071436|LineCameraSkew = -0.001615|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000500|DSR ID = ap1336-dsr|ImageID = 46196|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 118000|OriginalHeight = 72991|ICC Profile = ScanScope v1" 40 0.25875 0.0018 0.00022 0.00262 0.00032 1 0.15614 0.68721 197.85608 167.44735 185.90117 0.70056 0.01401 0.0661 2086574
TCGA-A1-A0SQ-01Z-00-DX1.36071264-3407-4224-BCBB-2ED00294569A.svs ./output_tcga-brca\TCGA-A1-A0SQ-01Z-00-DX1.36071264-3407-4224-BCBB-2ED00294569A.svs Pen Marking aperio 4 89810 98874 0.2521 0.2521 "Aperio Image Library v11.1.6 98874x89810 (256x256) JPEG/RGB Q=30;Aperio Image Library v11.1.6 103000x89910 [0,100 98874x89810] (256x256) J2K/YUV16 Q=70|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1336|Filename = 46195|Date = 12/05/11|Time = 17:39:30|Time Zone = GMT-08:00|User = bcf19525-0142-4993-b774-fb5ad5362126|Parmset = COVERSLIP|MPP = 0.2521|Left = 20.067823|Top = 23.639782|LineCameraSkew = -0.001615|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000500|DSR ID = ap1336-dsr|ImageID = 46195|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 103000|OriginalHeight = 89910|ICC Profile = ScanScope v1" 40 0.70027 0.0013 0.00047 0.00216 0.00046 1 0.17293 0.65829 198.41973 157.52977 180.33228 0.6759 0.01539 0.08967 6073873
TCGA-A2-A0YF-01Z-00-DX1.6166E995-0669-43D6-B9C7-FE39BCE529CF.svs ./output_tcga-brca\TCGA-A2-A0YF-01Z-00-DX1.6166E995-0669-43D6-B9C7-FE39BCE529CF.svs Coverslip aperio 4 66761 151699 0.2505 0.2505 "Aperio Image Library v10.2.20 158000x66861 [0,0 151699x66761] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1248CNTLR|Filename = TCGA-A2-A0YF-01Z-00-DX1|Title = TCGA-A2-A0YF-01Z-00-DX1|Date = 02/07/11|Time = 14:11:55|User = 47bffa20-dd1d-426b-9d5e-b9b5cd4c2a47|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2505|Left = 20.967001|Top = 20.762953|LineCameraSkew = 0.001550|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 50536|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 158000|OriginalHeight = 66861|ICC Profile = ScanScope v1" 40 0.40707 0.00016 0.00096 0.00141 0.00143 1 0.15178 0.57822 182.71322 134.71094 169.86871 0.60028 0.03242 0.10198 4025762
TCGA-A2-A0YI-01Z-00-DX1.1CF2EC2D-C722-467F-8832-409B823E8D8F.svs ./output_tcga-brca\TCGA-A2-A0YI-01Z-00-DX1.1cf2ec2d-c722-467f-8832-409b823e8d8f.svs Converslip aperio 4 62758 134417 0.2505 0.2505 "Aperio Image Library v10.2.20 140000x62858 [0,0 134417x62758] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1248CNTLR|Filename = TCGA-A2-A0YI-01Z-00-DX1|Title = TCGA-A2-A0YI-01Z-00-DX1|Date = 02/04/11|Time = 14:25:10|User = 47bffa20-dd1d-426b-9d5e-b9b5cd4c2a47|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2505|Left = 21.542521|Top = 19.624994|LineCameraSkew = 0.001550|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 50292|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 140000|OriginalHeight = 62858|ICC Profile = ScanScope v1" 40 0.36012 0.00028 0.00157 0.00145 0.00209 1 0.14429 0.56282 175.0236 131.47218 170.20536 0.58396 0.0411 0.08984 2966700
TCGA-A2-A1FW-01Z-00-DX1.DC2BC5D7-E57B-444E-833F-9A1B6E11DE6D.svs ./output_tcga-brca\TCGA-A2-A1FW-01Z-00-DX1.DC2BC5D7-E57B-444E-833F-9A1B6E11DE6D.svs Knife Chatter aperio 4 47859 128316 0.2485 0.2485 "Aperio Image Library v10.2.41 134000x47959 [0,100 128316x47859] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1436CNTLR|Filename = TCGA-A2-A1FW-01Z-00-DX1|Title = TCGA-A2-A1FW-01Z-00-DX1|Date = 06/27/11|Time = 17:28:36|Time Zone = GMT-04:00|User = 816a6d95-4ab8-4763-9e22-513e35c6aa56|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2485|Left = 18.987188|Top = 16.958305|LineCameraSkew = 0.000833|LineAreaXOffset = -0.014041|LineAreaYOffset = 0.000544|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 69353|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 134000|OriginalHeight = 47959|ICC Profile = ScanScope v1" 40 0.33292 0.00125 0.00013 0.00218 0.00042 1 0.16338 0.66069 198.49692 158.14877 182.46664 0.67837 0.0183 0.08777 1997184
TCGA-A7-A6VV-01Z-00-DX2.4C2BF8C1-CC84-4A6E-BC0F-430BC8BE6B26.svs ./output_tcga-brca\TCGA-A7-A6VV-01Z-00-DX2.4C2BF8C1-CC84-4A6E-BC0F-430BC8BE6B26.svs Very little tissue aperio 4 89026 99008 0.2468 0.2468 "Aperio Image Library v12.0.11 103168x89126 [0,100 99008x89026] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 992|ScanScope ID = SS1552CNTLR|Filename = TCGA-A7-A6VV-01Z-00-DX2|Title = TCGA-A7-A6VV-01Z-00-DX2|Date = 08/02/13|Time = 14:24:36|Time Zone = GMT-04:00|User = 982af3a6-933a-4800-be4c-319292af72cc|Parmset = GOG136 on O: Drive|MPP = 0.2468|Left = 12.909687|Top = 23.471884|LineCameraSkew = -0.000950|LineAreaXOffset = 0.006927|LineAreaYOffset = -0.001649|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 133379|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 103168|OriginalHeight = 89126|ICC Profile = ScanScope v1" 40 0.11098 0.00217 0.00114 0.00248 0.00039 1 0.20082 0.68617 198.62175 166.83767 185.98332 0.70009 0.0144 0.06914 955228
TCGA-A7-A6VX-01Z-00-DX2.9EE94B59-6A2C-4507-AA4F-DC6402F2B74F.svs ./output_tcga-brca\TCGA-A7-A6VX-01Z-00-DX2.9EE94B59-6A2C-4507-AA4F-DC6402F2B74F.svs Missing Tissue aperio 3 35918 46648 0.2456 0.2456 "Aperio Image Library vFS90 01 48608x36018 [0,100 46648x35918] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 992|ScanScope ID = SS1534CNTLR|Filename = TCGA-A7-A6VX-01Z-00-DX2|Title = TCGA-A7-A6VX-01Z-00-DX2|Date = 08/02/13|Time = 17:10:37|Time Zone = GMT-04:00|User = 82cc914a-f539-49d7-8197-c56d3984f729|Parmset = GOG136 on O: Drive|MPP = 0.2456|Left = 26.162260|Top = 16.904634|LineCameraSkew = -0.000622|LineAreaXOffset = 0.001338|LineAreaYOffset = -0.001931|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 133409|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 48608|OriginalHeight = 36018|ICC Profile = ScanScope v1" 40 0.09795 0.00461 0.00257 0.00521 0.00125 1 0.13306 0.79067 208.20089 198.49339 213.27473 0.7964 0.01967 0.01761 160230
TCGA-AC-A23H-01Z-00-DX1.8E0AE339-1047-4CA5-BFC5-37A3B10FD8B5.svs ./output_tcga-brca\TCGA-AC-A23H-01Z-00-DX1.8E0AE339-1047-4CA5-BFC5-37A3B10FD8B5.svs Black ink on edges aperio 3 40776 33864 0.2457 0.2457 "Aperio Image Library v10.2.41 34544x40876 [0,100 33864x40776] (240x240) J2K/YUV16 Q=70|AppMag = 40|StripeWidth = 2032|ScanScope ID = SS1546|Filename = 28697|Date = 07/13/11|Time = 14:52:04|Time Zone = GMT-07:00|User = fd41823d-5273-43eb-bd56-2bcf9e48caaa|MPP = 0.2457|Left = 25.546551|Top = 15.948736|LineCameraSkew = 0.000963|LineAreaXOffset = 0.005330|LineAreaYOffset = -0.004028|Focus Offset = 0.000000|DSR ID = ap1546-dsr|ImageID = 28697|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 34544|OriginalHeight = 40876|ICC Profile = ScanScope v1" 40 0.3184 0.00046 0.00088 0.00149 0.00166 1 0.19066 0.5336 171.12433 123.5103 157.35812 0.55532 0.0304 0.10155 429172
TCGA-AO-A0JE-01Z-00-DX1.82D33053-E305-47D8-9B02-B55511EBB06D.svs ./output_tcga-brca\TCGA-AO-A0JE-01Z-00-DX1.82D33053-E305-47D8-9B02-B55511EBB06D.svs Coverslip edge aperio 3 39098 61751 0.4992 0.4992 "Aperio Image Library v10.2.24 62992x39198 [0,100 61751x39098] (256x256) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = IPTH5003|Filename = 254555|Date = 02/07/11|Time = 15:49:17|User = 878cd1df-3fb9-4d81-997d-1c25651c07af|MPP = 0.4992|Left = 20.757687|Top = 23.656183|LineCameraSkew = 0.000325|LineAreaXOffset = 0.014723|LineAreaYOffset = 0.032050|Focus Offset = -0.000500|DSR ID = ap1251-dsr|ImageID = 254555|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 62992|OriginalHeight = 39198|ICC Profile = ScanScope v1" 20 0.59793 0.00125 0.00132 0.0009 0.00092 0.992 0.22946 0.55978 171.25457 132.56245 159.74697 0.57737 0.02416 0.08265 5639356
TCGA-BH-A0BL-01Z-00-DX1.D5A413B0-2141-4A6F-A671-6C5EA8641D25.svs ./output_tcga-brca\TCGA-BH-A0BL-01Z-00-DX1.D5A413B0-2141-4A6F-A671-6C5EA8641D25.svs Air Bubble aperio 4 81571 85450 0.2505 0.2505 "Aperio Image Library v10.2.41 89000x81671 [0,0 85450x81571] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1248CNTLR|Filename = TCGA-BH-A0BL-01Z-00-DX1|Title = TCGA-BH-A0BL-01Z-00-DX1|Date = 06/08/11|Time = 18:29:40|Time Zone = GMT-04:00|User = e7a90227-eba8-4fea-a625-16cb7e474785|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2505|Left = 34.655155|Top = 20.541393|LineCameraSkew = 0.001550|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 67761|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 89000|OriginalHeight = 81671|ICC Profile = ScanScope v1" 40 0.79077 0.00308 0.00184 0.00311 0.00092 0.96141 0.23025 0.67103 190.18461 164.60282 179.50252 0.68216 0.01071 0.05585 5381863
TCGA-BH-A0EA-01Z-00-DX1.85FF2B48-2AF7-4C15-A7E6-FCA68CAB76C7.svs ./output_tcga-brca\TCGA-BH-A0EA-01Z-00-DX1.85FF2B48-2AF7-4C15-A7E6-FCA68CAB76C7.svs Air Bubble aperio 4 65146 85450 0.2505 0.2505 "Aperio Image Library v10.2.41 89000x65246 [0,0 85450x65146] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1248CNTLR|Filename = TCGA-BH-A0EA-01Z-00-DX1|Title = TCGA-BH-A0EA-01Z-00-DX1|Date = 06/07/11|Time = 15:44:19|Time Zone = GMT-04:00|User = e7a90227-eba8-4fea-a625-16cb7e474785|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2505|Left = 30.228559|Top = 18.569065|LineCameraSkew = 0.001550|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 67652|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 89000|OriginalHeight = 65246|ICC Profile = ScanScope v1" 40 0.68748 0.00158 0.00144 0.00237 0.00112 0.95858 0.19117 0.65518 189.57538 159.07527 180.06859 0.66897 0.0183 0.06532 3737219
TCGA-BH-A0EI-01Z-00-DX1.929E126A-C9F8-4240-BF00-B6C4A57B7FF6.svs ./output_tcga-brca\TCGA-BH-A0EI-01Z-00-DX1.929E126A-C9F8-4240-BF00-B6C4A57B7FF6.svs Air Bubble aperio 4 88865 99852 0.2505 0.2505 "Aperio Image Library v10.2.41 104000x88965 [0,0 99852x88865] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1248CNTLR|Filename = TCGA-BH-A0EI-01Z-00-DX1|Title = TCGA-BH-A0EI-01Z-00-DX1|Date = 06/08/11|Time = 12:14:29|Time Zone = GMT-04:00|User = e7a90227-eba8-4fea-a625-16cb7e474785|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2505|Left = 28.436893|Top = 22.362549|LineCameraSkew = 0.001550|LineAreaXOffset = 0.000000|LineAreaYOffset = 0.000000|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 67732|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 104000|OriginalHeight = 88965|ICC Profile = ScanScope v1" 40 0.51797 0.00281 0.00185 0.00357 0.00116 0.88179 0.18201 0.71113 201.38855 174.43478 190.73951 0.72295 0.01233 0.05861 4487854
TCGA-BH-A0HF-01Z-00-DX1.1EB2F7CE-54F4-4E41-A3CF-78209770B7CE.svs ./output_tcga-brca\TCGA-BH-A0HF-01Z-00-DX1.1EB2F7CE-54F4-4E41-A3CF-78209770B7CE.svs Air Bubble aperio 4 65594 105334 0.2485 0.2485 "Aperio Image Library v10.2.20 110000x65694 [0,100 105334x65594] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1436CNTLR|Filename = TCGA-BH-A0HF-01Z-00-DX1|Title = TCGA-BH-A0HF-01Z-00-DX1|Date = 12/23/10|Time = 14:37:15|User = ebdd1444-dad6-438c-add5-06cd4952af22|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2485|Left = 29.817221|Top = 20.001448|LineCameraSkew = 0.000833|LineAreaXOffset = -0.014041|LineAreaYOffset = 0.000544|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 43897|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 110000|OriginalHeight = 65694|ICC Profile = ScanScope v1" 40 0.38837 0.0034 0.00223 0.00385 0.00139 0.94778 0.19941 0.71579 190.4601 179.01491 193.98813 0.72213 0.019 0.02173 2620971
TCGA-BH-A42V-01Z-00-DX1.B6D78256-05D1-45FA-826A-1B8554D60B7D.svs ./output_tcga-brca\TCGA-BH-A42V-01Z-00-DX1.B6D78256-05D1-45FA-826A-1B8554D60B7D.svs Air Bubble aperio 4 44456 77112 0.2456 0.2456 "Aperio Image Library vFS90 01 80352x44556 [0,100 77112x44456] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 992|ScanScope ID = SS1534CNTLR|Filename = TCGA-BH-A42V-01Z-00-DX1|Title = TCGA-BH-A42V-01Z-00-DX1|Date = 12/10/12|Time = 17:49:34|Time Zone = GMT-05:00|User = b222dcdc-3b90-4350-8e0d-7f62a39f2eb4|Parmset = GOG136 on RESBPCLACIE02|MPP = 0.2456|Left = 26.076368|Top = 13.862156|LineCameraSkew = -0.000622|LineAreaXOffset = 0.001338|LineAreaYOffset = -0.001931|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 120614|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 80352|OriginalHeight = 44556|ICC Profile = ScanScope v1" 40 0.82828 0.00438 0.00276 0.00485 0.00173 1 0.18529 0.73991 196.51986 185.8373 193.7433 0.74483 0.00735 0.02266 2772664
TCGA-C8-A12P-01Z-00-DX1.670B5DE8-07B0-4E4C-93FA-FA3DFFCCE50D.svs ./output_tcga-brca\TCGA-C8-A12P-01Z-00-DX1.670B5DE8-07B0-4E4C-93FA-FA3DFFCCE50D.svs Crack aperio 4 58924 53312 0.2468 0.2468 "Aperio Image Library v10.2.41 55552x59024 [0,100 53312x58924] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 992|ScanScope ID = SS1552CNTLR|Filename = TCGA-C8-A12P-01Z-00-DX1|Title = TCGA-C8-A12P-01Z-00-DX1|Date = 08/19/11|Time = 15:35:41|Time Zone = GMT-04:00|User = 255b5b8c-c740-4321-87c8-cdf94e6046ba|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2468|Left = 18.691525|Top = 21.706438|LineCameraSkew = -0.000950|LineAreaXOffset = 0.006927|LineAreaYOffset = -0.001649|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 74978|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 55552|OriginalHeight = 59024|ICC Profile = ScanScope v1" 40 0.55058 0.00217 0.00035 0.00327 0.00096 1 0.12959 0.68967 196.85335 167.93208 192.72602 0.70355 0.02571 0.06002 1688695
TCGA-C8-A12V-01Z-00-DX1.84B29360-B87B-4648-A697-B6610336C2BB.svs ./output_tcga-brca\TCGA-C8-A12V-01Z-00-DX1.84B29360-B87B-4648-A697-B6610336C2BB.svs Crack aperio 4 75937 81394 0.2485 0.2485 "Aperio Image Library v10.2.41 85000x76037 [0,100 81394x75937] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1436CNTLR|Filename = TCGA-C8-A12V-01Z-00-DX1|Title = TCGA-C8-A12V-01Z-00-DX1|Date = 08/18/11|Time = 11:14:06|Time Zone = GMT-04:00|User = 818f77d9-645e-4bae-a4eb-085b0e2a6a16|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2485|Left = 25.943161|Top = 20.992895|LineCameraSkew = 0.000833|LineAreaXOffset = -0.014041|LineAreaYOffset = 0.000544|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 74795|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 85000|OriginalHeight = 76037|ICC Profile = ScanScope v1" 40 0.63862 0.00038 0.00061 0.00119 0.00111 1 0.16084 0.58986 176.18618 140.52321 172.59374 0.60723 0.03426 0.07343 3855290
TCGA-D8-A141-01Z-00-DX2.DBD0D81E-28FC-4466-BDE3-94753BD6CBEB.svs ./output_tcga-brca\TCGA-D8-A141-01Z-00-DX2.DBD0D81E-28FC-4466-BDE3-94753BD6CBEB.svs Folded Tissue aperio 4 64679 55775 0.2527 0.2527 "Aperio Image Library v12.0.11 56896x64779 [0,100 55775x64679] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 2032|ScanScope ID = SS1764CNTLR|Filename = TCGA-D8-A141-01Z-00-DX2|Title = TCGA-D8-A141-01Z-00-DX2|Date = 03/11/14|Time = 14:31:19|Time Zone = GMT-04:00|User = 45a0a85d-31d6-470a-9338-e9168556e3ed|Parmset = GOG136 on O: Drive|MPP = 0.2527|Left = 23.586472|Top = 20.877790|LineCameraSkew = -0.000153|LineAreaXOffset = 0.011464|LineAreaYOffset = -0.002805|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 152931|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 64779|ICC Profile = ScanScope v1" 40 0.56348 0.00064 0.00138 0.00029 0.00157 1 0.19307 0.49145 153.22652 114.42653 151.15473 0.51065 0.04041 0.07917 1984933
TCGA-D8-A1J8-01Z-00-DX2.5DCB3447-548D-442C-86B1-CEF79B8689DF.svs ./output_tcga-brca\TCGA-D8-A1J8-01Z-00-DX2.5DCB3447-548D-442C-86B1-CEF79B8689DF.svs Folded Tissue aperio 4 94113 101591 0.2527 0.2527 "Aperio Image Library v12.0.11 103632x94213 [0,100 101591x94113] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 2032|ScanScope ID = SS1764CNTLR|Filename = TCGA-D8-A1J8-01Z-00-DX2|Title = TCGA-D8-A1J8-01Z-00-DX2|Date = 03/11/14|Time = 14:46:17|Time Zone = GMT-04:00|User = 45a0a85d-31d6-470a-9338-e9168556e3ed|Parmset = GOG136 on O: Drive|MPP = 0.2527|Left = 16.255310|Top = 24.154518|LineCameraSkew = -0.000153|LineAreaXOffset = 0.011464|LineAreaYOffset = -0.002805|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 152933|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 103632|OriginalHeight = 94213|ICC Profile = ScanScope v1" 40 0.56227 0.00163 0.00025 0.00261 0.00078 1 0.14591 0.67748 187.81942 166.51828 190.26788 0.68861 0.02832 0.04206 5250308
TCGA-D8-A1XR-01Z-00-DX2.A103FB8B-4397-4DD4-8587-90A736407484.svs ./output_tcga-brca\TCGA-D8-A1XR-01Z-00-DX2.A103FB8B-4397-4DD4-8587-90A736407484.svs Tissue Thickness aperio 4 90174 81671 0.2527 0.2527 "Aperio Image Library v12.0.11 83312x90274 [0,100 81671x90174] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 2032|ScanScope ID = SS1764CNTLR|Filename = TCGA-D8-A1XR-01Z-00-DX2|Title = TCGA-D8-A1XR-01Z-00-DX2|Date = 03/11/14|Time = 17:53:35|Time Zone = GMT-04:00|User = 45a0a85d-31d6-470a-9338-e9168556e3ed|Parmset = GOG136 on O: Drive|MPP = 0.2527|Left = 21.376713|Top = 23.960276|LineCameraSkew = -0.000153|LineAreaXOffset = 0.011464|LineAreaYOffset = -0.002805|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 152948|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 83312|OriginalHeight = 90274|ICC Profile = ScanScope v1" 40 0.45722 0.00111 0.0003 0.00195 0.00085 1 0.15294 0.65008 179.7373 159.42873 187.54641 0.66159 0.03636 0.03795 3288093
TCGA-D8-A1XY-01Z-00-DX2.33D96E5C-5291-4864-B282-8BACA2043586.svs ./output_tcga-brca\TCGA-D8-A1XY-01Z-00-DX2.33D96E5C-5291-4864-B282-8BACA2043586.svs Air Bubble aperio 4 73012 113543 0.2527 0.2527 "Aperio Image Library v12.0.11 115824x73112 [0,100 113543x73012] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 2032|ScanScope ID = SS1764CNTLR|Filename = TCGA-D8-A1XY-01Z-00-DX2|Title = TCGA-D8-A1XY-01Z-00-DX2|Date = 03/11/14|Time = 18:46:33|Time Zone = GMT-04:00|User = 45a0a85d-31d6-470a-9338-e9168556e3ed|Parmset = GOG136 on O: Drive|MPP = 0.2527|Left = 18.301523|Top = 21.272171|LineCameraSkew = -0.000153|LineAreaXOffset = 0.011464|LineAreaYOffset = -0.002805|Focus Offset = 0.000000|DSR ID = resc3-dsr2|ImageID = 152952|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 115824|OriginalHeight = 73112|ICC Profile = ScanScope v1" 40 0.35862 0.0019 0.00022 0.00279 0.00047 1 0.21811 0.66226 188.31919 161.92323 180.56621 0.67428 0.01665 0.05635 2903551
TCGA-E9-A1ND-01Z-00-DX1.5C2F5250-A3B2-4B97-9E11-56CF3C7CA2DB.svs ./output_tcga-brca\TCGA-E9-A1ND-01Z-00-DX1.5C2F5250-A3B2-4B97-9E11-56CF3C7CA2DB.svs Knife Chatter aperio 4 68377 66073 0.2485 0.2485 "Aperio Image Library v10.2.20 69000x68477 [0,100 66073x68377] (256x256) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 1000|ScanScope ID = SS1436CNTLR|Filename = TCGA-E9-A1ND-01Z-00-DX1|Title = TCGA-E9-A1ND-01Z-00-DX1|Date = 03/10/11|Time = 17:10:52|User = e86cac23-4435-481b-beba-236a513cb4a5|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2485|Left = 27.854691|Top = 19.292591|LineCameraSkew = 0.000833|LineAreaXOffset = -0.014041|LineAreaYOffset = 0.000544|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 1001801|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 69000|OriginalHeight = 68477|ICC Profile = ScanScope v1" 40 0.40144 0.00159 0.00027 0.00257 0.00037 1 0.15431 0.67825 210.00078 160.47107 187.62893 0.69952 0.01786 0.1088 1771499
TCGA-E9-A22H-01Z-00-DX1.0ee39fd1-b077-40ea-bd0d-8a3db474fdd5.svs outdir_t100/TCGA-E9-A22H-01Z-00-DX1.0ee39fd1-b077-40ea-bd0d-8a3db474fdd5.svs Pen marking aperio 4 72783 87584 0.2468 0.2468 "Aperio Image Library v10.2.41 91264x72883 [0,100 87584x72783] (240x240) JPEG/RGB Q=30|AppMag = 40|StripeWidth = 992|ScanScope ID = SS1552CNTLR|Filename = TCGA-E9-A22H-01Z-00-DX1|Title = TCGA-E9-A22H-01Z-00-DX1|Date = 04/12/11|Time = 18:56:03|Time Zone = GMT-04:00|User = 257c2c14-8b48-46f8-9c61-a28b0a73bb60|Parmset = GOG136 on RESBPCLACIE01|MPP = 0.2468|Left = 16.539009|Top = 21.008293|LineCameraSkew = -0.000950|LineAreaXOffset = 0.006927|LineAreaYOffset = -0.001649|Focus Offset = -0.000500|DSR ID = resc3-dsr2|ImageID = 60363|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 91264|OriginalHeight = 72883|ICC Profile = ScanScope v1"