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Releases: usegalaxy-eu/ena-upload-cli

0.3.0

10 Jun 16:02
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This release includes:

  • Updated the XSD templates from ENA enabling correct local validations of the tables
  • Updated XML templates to support new fields
  • Replacing the curl dependency with the requests library from python (thank you @mobilegenome!)
  • --version option to print out the version of the tool

0.2.8

30 Apr 10:07
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  • Support for non mandatory columns in the viral sample table (Thanks @tpall !)

0.2.7

30 Mar 15:07
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  • Better parsing of accession numbers and outputted in stdout in a tab separated manner
  • Receipt is outputted as a receipt.xml file in the working directory
  • Better handling of errors that do not produce a receipt
  • Dropping support for python v2.X

Zenodo release

12 Feb 13:42
3a38dd3
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0.2.6

add usegalaxy.eu badge

0.2.5

21 Dec 13:34
3a38dd3
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  • --tool option split in two: --tool TOOL_NAME default='ena-upload-cli' and --tool_version TOOL_VERSION default='0.2.5'
  • --tool is not a mandatory option anymore
  • tool_name and tool_version used for extra metadata fields in run, experiment, study and sample tables:
        <RUN_ATTRIBUTES>
            <RUN_ATTRIBUTE>
                <TAG>SUBMISSION_TOOL</TAG>
                <VALUE>${tool_name}</VALUE>
            </RUN_ATTRIBUTE>
            <RUN_ATTRIBUTE>
                <TAG>SUBMISSION_TOOL_VERSION</TAG>
                <VALUE>${tool_version}</VALUE>
            </RUN_ATTRIBUTE>
        </RUN_ATTRIBUTES>

0.2.4

19 Nov 21:25
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  • no support for password and webin-id as argument foor the tool anymore
  • credentials are passed through .secret.yml file

0.2.3

19 Nov 09:39
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  • better password parsing from .secret file

0.2.2

05 Oct 22:18
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  • SUBMISSION_TOOL tag added to all templates

0.2.1

04 Oct 18:39
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  • fixes bug with wrong center name in runs file

0.2.0

24 Sep 14:21
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  • Fixes problems while submitting to the public ENA server