Move Joss paper to docs (#264) #43

	# publish to gh-pages

	on:
	workflow_dispatch:
	push:
	branches:
	- main # Occurs on protected branch through PR
	- development

	name: Quarto Publish

	jobs:
	build-deploy:
	runs-on: ubuntu-latest
	permissions:
	contents: write
	steps:
	- name: Check out repository
	uses: actions/checkout@v4

	- name: Add micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	micromamba-version: "1.5.6-0" # any version from https://github.com/mamba-org/micromamba-releases
	environment-file: .github/workflows/envs/build_quickstart.yml
	init-shell: bash
	cache-environment: true
	post-cleanup: "all"

	- name: Render docs with quarto
	shell: bash -l {0}
	run: \|
	quarto install tinytex
	cd docs/user
	quarto render --cache-refresh --log-level info

	## Always deploy to version directory
	- name: Deploy quarto book
	uses: peaceiris/actions-gh-pages@v3

	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	destination_dir: ${{ github.ref_name }}/_quickstart
	publish_dir: docs/user/_build/book

	# - name: Deploy quarto lectures
	# uses: peaceiris/actions-gh-pages@v3

	# with:
	# github_token: ${{ secrets.GITHUB_TOKEN }}
	# destination_dir: lectures # The dest dir is identified by branch
	# publish_dir: WebSlides/_slides

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