tools for working with genome variation graphs

Modular Multi-scale Integrated Genome Graph Browser

Parallel Sequence to Graph Alignment

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

An accurate aligner of long reads to a variation graph, based on co-linear chaining

A web-based, interactive pangenome visualization tool

Linear-time, low-memory construction of variation graphs

Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]

SV genotyper for long reads with a variation graph

A Go library for working with Graphical Fragment Assembly format

Handlegraph RDF writers in java for working with variation graph genome data.

Analysis of shared parts of a pangenome

Library to parse, edit and handle in memory GFA graphs

This is experiment to measure performance in vg recalibrate, testing different models.

Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.

Notes upon pangenome graphs construction

A tool for modelling graphs of genetic variation.