BuildSBMLFix.xml

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<project default="create_run_jar" name="Create Runnable Jar for Project ModelPolisher">
  <!--this file was created by Eclipse Runnable JAR Export Wizard -->
  <!--ANT 1.7 is required -->
  <target name="create_run_jar">
    <jar
      compress="true"
      filesetmanifest="mergewithoutmain"
      index="true"
      indexMetaInf="true"
      jarfile="target/ModelFix.jar"
      level="9"
      manifestencoding="utf-8"
      strict="warn"
      update="true"
    >
      <manifest>
        <attribute name="Built-By" value="${user.name}"/>
        <section name="ModelFix">
          <attribute name="Specification-Title"    value="ModelFix"/>
          <attribute name="Specification-Version"  value="1.0"/>
          <attribute name="Implementation-Vendor"  value="University of California, San Diego"/>
        </section>
        <attribute name="Main-Class" value="edu.ucsd.sbrg.util.SBMLFix"/>
        <attribute name="Class-Path" value="."/>
      </manifest>
      <fileset dir="target/classes">
        <include name="edu/ucsd/sbrg/bigg/ModelPolisher.class"/>
        <include name="edu/ucsd/sbrg/bigg/SBMLPolisher.class"/>
        <include name="edu/ucsd/sbrg/util/SBMLFix.class"/>
      </fileset>
      <zipfileset excludes="META-INF/*.SF, META-INF/INDEX.LIST, META-INF/licenses/**, tidy.gif" src="lib/JSBML-2472-incl-libs.jar"/>
      <zipfileset excludes="META-INF/*.SF, META-INF/INDEX.LIST, META-INF/licenses/**" src="lib/sysbio-1388.jar">
        <exclude name="de/zbit/gui/**"/>
        <exclude name="de/zbit/kegg/**"/>
        <exclude name="org/argparser/**"/>
      </zipfileset>
    </jar>
  </target>
</project>