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Some questions about gene selection #249

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HelloWorldLTY opened this issue Oct 15, 2022 · 0 comments

HelloWorldLTY commented Oct 15, 2022

Hi, I used the ENSG gene type to run the gene ontology method, but I found that it cannot work, and I received this error:

**FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS

I can try to change the type of gene into SGD id, but I think in this project, they use ENSG and successfully run the go enrichment analysis.
https://github.com/chenhcs/GIANT/blob/main/example_data/DE_genes/atac_Thymus_c0.txt

Could you please help me solve this problem? Thanks.

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