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[pre-commit.ci] pre-commit autoupdate #3003
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## latest #3003 +/- ##
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Coverage 86.70% 86.70%
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Files 136 136
Lines 15829 15829
Branches 2716 2716
=======================================
Hits 13725 13725
Misses 1794 1794
Partials 310 310
Flags with carried forward coverage won't be shown. Click here to find out more. ☔ View full report in Codecov by Sentry. |
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dev env failure gives this error message:
maybe this unresolved issue? tox-dev/tox-conda#108 |
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pre-commit.ci autofix |
pre-commit.ci update |
pre-commit.ci autoupdate |
pre-commit.ci rebase |
pre-commit.ci help |
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updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.6.0](pre-commit/pre-commit-hooks@v4.4.0...v4.6.0) - [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.4.9](astral-sh/ruff-pre-commit@v0.2.0...v0.4.9) - [github.com/tox-dev/tox-ini-fmt: 0.5.2 → 1.3.1](tox-dev/tox-ini-fmt@0.5.2...1.3.1)
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for more information, see https://pre-commit.ci
pre-commit.ci autofix |
for more information, see https://pre-commit.ci
looks like this was fixed somewhere in there! So I'm going to try to merge this, assuming (most of) the tests pass... |
…mmit-ci-update-config
…/sourmash into pre-commit-ci-update-config
oh, no, it wasn't. sigh. |
Release candidate testing: - [ ] Command line tests pass for a release candidate - [ ] All eight release candidate wheels are built Releasing to PyPI: - [ ] RC tag(s)s deleted on github - [ ] Release tag cut - [ ] Release notes written - [ ] All eight release wheels built - [ ] Release wheels uploaded to pypi - [ ] tar.gz distribution uploaded to pypi After release to PyPI and conda-forge/bioconda packages built: - [ ] [PyPI page](https://pypi.org/project/sourmash/) updated - [ ] Zenodo DOI successfully minted upon new github release - [see search results](https://zenodo.org/search?page=1&size=20&q=sourmash&sort=mostrecent) - [ ] `pip install sourmash` installs the correct version - [ ] [conda-forge sourmash-minimal-feedstock](https://github.com/conda-forge/sourmash-minimal-feedstock) has updated `sourmash-minimal` to the correct version - [ ] `mamba create -n smash-release -y sourmash` installs the correct version Optional but recommended: - [ ] PR submitted to update pyodide version - [ ] PR submitted to update spack version --- ## Release notes Minor new features: * check `select` parameters; enforce types when building manifests (#3212) * patch-fix `sig extract` to no longer create empty zips (#3214) Bug fixes: * adjust how ANI is calculated in the revindex code. (#3218) Cleanup and documentation updates: * final updates for 2024 JOSS publication (#3225) * Improve JOSS paper affiliations (#3224) * fix DOI for Rahman Hera paper in JOSS pub. (#3221) * upd citations, minor text (#3220) Developer updates: * bump sourmash core version to 0.14.1 (#3219) * bump version to 4.8.10-dev (#3211) Dependabot updates: - Bump proptest from 1.4.0 to 1.5.0 (#3222) - [pre-commit.ci] pre-commit autoupdate (#3223) - [pre-commit.ci] pre-commit autoupdate (#3003) - Bump histogram from 0.10.2 to 0.11.0 (#3216) - Bump pypa/cibuildwheel from 2.19.0 to 2.19.1 (#3217) - Bump histogram from 0.10.1 to 0.10.2 (#3207) - Bump statrs from 0.16.1 to 0.17.1 (#3205) - Bump roaring from 0.10.4 to 0.10.5 (#3206) - Bump primal-check from 0.3.3 to 0.3.4 (#3208) - Bump niffler from 2.5.0 to 2.6.0 (#3204) - Bump pypa/cibuildwheel from 2.18.1 to 2.19.0 (#3202)
updates: