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33 Open 99 Closed
33 Open 99 Closed
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Issues list

Autobump installing older versions bug Something isn't working
#3366 opened Oct 25, 2024 by fgvieira
Deactivate stale bot bug Something isn't working
#3284 opened Oct 1, 2024 by lczech
Custom meta-wrappers enhancement New feature or request
#3141 opened Aug 27, 2024 by t-silvers
ENSEMBL-SEQUENCE does not work for all species bug Something isn't working
#3070 opened Jul 12, 2024 by lczech
4
adding a cff file for citing the project enhancement New feature or request question Further information is requested
#2935 opened May 13, 2024 by cmeesters
NameError: name 'PosixPath' is not defined bug Something isn't working
#2793 opened Apr 6, 2024 by odetteg
1
Describe in the documentation of STAR wrapper how to use shared memory enhancement New feature or request
#2680 opened Feb 19, 2024 by moxgreen
2
Hisat2 align on large index bug Something isn't working
#2537 opened Jan 10, 2024 by andreott
7
change to earlier docs versions on readthedocs enhancement New feature or request
#2392 opened Dec 4, 2023 by nnneeennn
@johanneskoester
4
CI: autobump workflow never finishes
#1789 opened Sep 1, 2023 by fgvieira
2
Issue with TrimmomaticPE log reporting; incompatible with MultiQC bug Something isn't working
#961 opened Dec 6, 2022 by oligomyeggo
10
Error in snakemake wrapper goes not to log file bug Something isn't working
#885 opened Nov 17, 2022 by SilasK
@johanneskoester
13
security considerations for wrapper retrieval bug Something isn't working
#478 opened Apr 24, 2022 by FliesLikeABrick
@johanneskoester
2
vep download cache vs vep annotate bug Something isn't working
#365 opened May 24, 2021 by lczech
3
using ensemblgenomes for non-vertebrate references enhancement New feature or request Stale
#341 opened Apr 17, 2021 by RvV1979
3
wrappers for hap.py and dipcall enhancement New feature or request Stale
#294 opened Feb 27, 2021 by nate-d-olson
12
cutadapt pe bug Something isn't working
#291 opened Feb 9, 2021 by RoebideBruijn
1
gatk variantrecalibrator wrapper does not specify properly the resources path bug Something isn't working
#280 opened Jan 12, 2021 by alejocrojo09
1
Varscan/Snpeff wrappers are incompatible - please add warning to documentation bug Something isn't working
#275 opened Dec 3, 2020 by moldach
2
utility functions for general-purpose wrapper setup (e.g. JVM memory option handling) enhancement New feature or request
#235 opened Oct 20, 2020 by dlaehnemann
1
"stable" tag on readthedocs does not display the "Code" blocks bug Something isn't working
#223 opened Oct 14, 2020 by lparsons
1
Strelk2 bug: unsupported pickle protocol:3 bug Something isn't working
#192 opened Sep 24, 2020 by moldach
1
Problem with the VEP ANNOTATE snakemake wrapper bug Something isn't working
#167 opened Aug 31, 2020 by moldach
1
Error occurred during initialization of VM java/lang/NoClassDefFoundError: java/lang/Object bug Something isn't working
#164 opened Aug 26, 2020 by moldach
2
Add a joint-wrapper which parallelizes SAMTOOLS MPILEUP/VARSCAN MPILEUP2SNP enhancement New feature or request
#163 opened Aug 25, 2020 by moldach
7
ProTip! Exclude everything labeled bug with -label:bug.